Pairwise Alignments

Query, 602 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas putida KT2440

Subject, 618 a.a., lipid ABC transporter ATPase/inner membrane protein (RefSeq) from Shewanella sp. ANA-3

 Score =  278 bits (711), Expect = 5e-79
 Identities = 184/579 (31%), Positives = 314/579 (54%), Gaps = 23/579 (3%)

Query: 23  YVKPYVGIFLLSIVGFVIFASTQPMLAGILKYFVDGLSNPEAV-LFPNVPYLRD-LQLLQ 80
           ++KPY     L +V  ++F     +L G L +    LS  + V L  +  +++D  Q L 
Sbjct: 45  FLKPY----RLRVVAAIVF-----LLIGSLAW----LSLGQGVRLMVDEGFIKDNAQRLN 91

Query: 81  AVPLLIILIAAWQGLGSFLGNYFLAKVSLSLVHDLRVALFNKLLVLPNRYFDNHNSGHLI 140
            + LL++LI A  G   F   Y +  +   +  D+R+ ++N+LL L   ++    +G +I
Sbjct: 92  EIILLVLLITAVSGTAVFCRFYLMTWLGERVSADIRLTVYNQLLKLSPAFYAKVRTGEVI 151

Query: 141 SRITFNVTMVTGAATDAIKVVIREGLTVVFLFAYLLWMNWHLTLVMVAILPVIAVMVSIA 200
           SR T + T++      ++ + +R G+TV+   A +   +  +TL+++  +P++   V   
Sbjct: 152 SRFTADSTLLQTVVGSSLSMALRSGVTVIGGLAMMGITSVKMTLLVLLAVPLVLGPVGFF 211

Query: 201 SKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEAYEQQRF-GQASQSNTDKQLRM 259
            +K R  +++ Q  + D+     ET+     V+++G E  ++  F G+          R+
Sbjct: 212 GRKVRTLARESQDRVADLGAYVDETLHEIHTVQAYGHEDKDRSLFNGRVEDVMIAASGRI 271

Query: 260 TKTGSLYTPMLQLVIYSAMAALMFLVLF--LRGDSTAGDLVAYITAAGLLPKPIRQLSEV 317
                L + ++ L I +A+A++ ++     + G  T G+L A++  A ++   +  +SEV
Sbjct: 272 RYRAMLISSVMFLSI-AAIASVTWVGAHDVMSGKMTGGELSAFMFYAVMVAGAVATISEV 330

Query: 318 SSTIQKGLAGAESIFEQLDEAPEVDTGTVEKE---RVEGRLEVRNLSFTYPGTEREVLSD 374
              IQ+    AE + E  +   ++      K    +V G L+++ L+F YP   + VL D
Sbjct: 331 VGEIQRASGAAERLIELAETEVDIPAPLEPKTLPAKVRGELQLQQLNFHYPEQTQLVLRD 390

Query: 375 ISFVAEPGQMIALVGRSGSGKSTLAALIPRFYHHDKGQILLDGVEIEHYRLRNLRRHVSQ 434
           +      G+ +ALVG SG+GKSTL  L+ RFY    G I LDG++I     ++LR   + 
Sbjct: 391 LELTITAGERVALVGPSGAGKSTLFQLLQRFYVPSSGSIHLDGIDIAELSPKDLRAQFAL 450

Query: 435 VTQHVTLFNDTVANNIAYGDLAGAPRADIEAAAADAYAKEFVDRLPKGFDTEVGENGVLL 494
           V Q   +F  +V  N+ YG +  + +  I+A  A A A EF+    +G+ T +GE GV L
Sbjct: 451 VPQDSVIFATSVLENVRYGRVDASEQEVIDACIA-ARAHEFISEFSEGYQTYLGERGVRL 509

Query: 495 SGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMQGRTTLVIAHRLST 554
           SGGQ+QR+AIAR +L + P+L+LDEATSALD  SE+ ++ ALD +M+G+TTL+IAHRL+T
Sbjct: 510 SGGQKQRIAIARVILADRPILLLDEATSALDALSEQKVKLALDELMKGKTTLIIAHRLAT 569

Query: 555 IEKADQILVMDQGRLVERGTHTELLAANGHYARLHAMGL 593
           +  AD+I+V D+GR+V  G H  L+  N  Y    ++ L
Sbjct: 570 VINADRIIVFDKGRIVASGKHQTLIQTNALYREFASLQL 608