Pairwise Alignments

Query, 472 a.a., HlyD family secretion protein from Pseudomonas putida KT2440

Subject, 441 a.a., HlyD family type I secretion membrane fusion protein (RefSeq) from Shewanella loihica PV-4

 Score =  148 bits (374), Expect = 3e-40
 Identities = 108/418 (25%), Positives = 192/418 (45%), Gaps = 6/418 (1%)

Query: 55  RYLQWSLLMFIGLALAWACIGEIDVIASAEGKIVPSGRSKLIQASEVAVVQSIHVVDGQP 114
           R + + +   + + L W+    I+ IA A+G++VP G  ++IQ+     + SI V +G  
Sbjct: 30  RRITFFIATAVFILLIWSIFTNIEEIAKAKGQVVPLGHRQVIQSQTGGTLASIAVAEGDL 89

Query: 115 VRKGDVLVELEGQLTEADIKRLGSELLAAQIDQARASTLLSALDGDVAPASLAPLIPQAT 174
           V+KGD++       ++A  + L S+    ++   R +  L   + D     L    P A 
Sbjct: 90  VQKGDLIANFVATDSQALKEELQSKQANLELKIERYTAFLEEREPDFNAYQLG--FP-AL 146

Query: 175 AAQQAGAQRWLEGQYLELQATLEQADAEIGQRAAEIRSAQGRADALRQLLVITRQLTADY 234
            AQ   A   L     E QA +  +++++ +  AE+ S +     L+  +    Q     
Sbjct: 147 VAQHINA---LARMNQEKQAIIALSESDVAKSEAELASVEQEITPLKDQIRSVEQTLKMM 203

Query: 235 KLLFSESAVAKHTYLEKEQARLEQERELALQRSRIDELNAARLAAQHRRSGAIAQLRRAM 294
             +  + AV+K   LE +Q      REL +   R   L       + + +   A L   +
Sbjct: 204 NSVKEQQAVSKLRMLESQQKLDAYIRELKVLEGRRSVLQRNIDNQEKQLAQKQASLFNEV 263

Query: 295 LDLHGEAQRRIATLEQELNKAEQRHRLKVLTSPVDGTVQQLAIHTQGGVVTPAQTLMVIV 354
            +   +AQ  +  +   L  ++   +   +TSPVDG +Q +  ++ G V+ P  T+ VIV
Sbjct: 264 GEKRTDAQAELLGIVARLKSSDSLVQQNRVTSPVDGIIQSIPNNSAGSVIQPGGTVAVIV 323

Query: 355 PTGEPVEVEVKVENKDIGFVFPGQHVEVKIETFTFTRYGVVPGVVESISDDAIEDDRHGL 414
           PT     +E K+  +DIGFV  GQ   +KI+ F ++RYG + G+V+ IS     D++ G+
Sbjct: 324 PTTPTALLEAKLSPRDIGFVTVGQKARIKIDAFDYSRYGAIDGLVKKISPSTDADEKGGV 383

Query: 415 LYSARIKLAKEALRVGDNDLPLTAGMAVRAEVIVDRRRVISFFLSPLQRHAKESLKER 472
            Y  +I + K       + L L  GM   A+++   + V  +   P+  +  E+  ER
Sbjct: 384 FYKVQIAIDKPYFGDQPDKLALIPGMTGEADIVTGDKTVFQYLWKPVFTNVTEAFGER 441