Pairwise Alignments

Query, 477 a.a., Outer membrane efflux protein from Pseudomonas putida KT2440

Subject, 499 a.a., RND efflux system, outer membrane lipoprotein, NodT (NCBI) from Rhodospirillum rubrum S1H

 Score = 88.2 bits (217), Expect = 6e-22
 Identities = 91/418 (21%), Positives = 174/418 (41%), Gaps = 24/418 (5%)

Query: 38  EAVDNNADLAAARADYGARREVVPQARAGLLPNLSAGAEMMNTRTKLDEPSITSNRSGNS 97
           +A+++N DL +A     + R      RA LLP ++ G ++ + RT          ++  +
Sbjct: 83  QALEHNRDLRSAALTVESARATYRIERADLLPTVNGGTDLTHQRTPRTATQTGKAQTTTN 142

Query: 98  WSATLAQPIFRADRWFQLQAAEAVNEQAALELSATEQN-------LILQTAQNYFAVLRA 150
           +SA +    +  D + ++++ E   E+A  +  ATE+        LI + A  Y  +L  
Sbjct: 143 YSANIGTTSYEIDFFGRIRSLE---EEALEQYFATEEARRSVQIALIAEVANAYITLLAD 199

Query: 151 QDNLAATKAEEAAFKRQLDQSNERFDVGLSDKTDVLQSQASYDTARANRIIAERQVQDAF 210
           +  L  T+          + + + FD G+  + DV Q+Q + +TARANR I  R V    
Sbjct: 200 RTLLQLTEETLNTRIESFNLTQQSFDRGVGTRLDVTQAQTTVETARANRAIYTRYVAQDI 259

Query: 211 EALVTLTNREY-TSIQGVVHSLPVQVPTPNDAKAWVETAGRQNLNLLATNYAVSAAEETL 269
            AL  L   +   ++      L +    PN           +  ++L   + + AA   +
Sbjct: 260 NALRLLVGDQLDANLLAGTPPLDLGRFFPNVPAGLPSDLLLRRPDILEAEHKLVAANANI 319

Query: 270 RQRKAGHAPTLDAVAKYQKGDNDSLGFTNPSQLGVRYSGDVEQTSVGLQLNIPIYSGGLT 329
              +A   P +            +LG T  + LG  +S      SVG  L++P++     
Sbjct: 320 GAARAAFWPKISLTG--------NLG-TASASLGDLFSSGSLAWSVGPSLSVPLFDFWRN 370

Query: 330 SSQVREAYQRLSQSEQQRESLRRQVVENTRNLHRAVNTDVEQVQARKQSIISNQSALEAT 389
            + +  A  +   +    E   +       +   A  T  +Q++A++  + + Q +   +
Sbjct: 371 EATLESAKVQREIAVAAYEKSIQTAFREVADALAAKGTLGDQLRAQQDLVAATQESYALS 430

Query: 390 EIGYQVGTRNIVDVLDAQRQLYTSVRDYNNSRYDYILDNLSLKQAAG----TLSPQDL 443
              Y  G  N +  LD+QR LY + +D  + R + + + ++L +  G      SP +L
Sbjct: 431 RNRYDQGIDNYLSTLDSQRSLYAAQQDLISVRANQLTNYITLYKVLGGGSFATSPSEL 488



 Score = 41.2 bits (95), Expect = 8e-08
 Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 29/189 (15%)

Query: 23  DVPSTVKTDLVSVYQEAVDNNADLAAARADYGARREVVPQARAGLLPNLSAGAEMMNTRT 82
           +VP+ + +DL+    + ++    L AA A+ GA       ARA   P +S    +     
Sbjct: 289 NVPAGLPSDLLLRRPDILEAEHKLVAANANIGA-------ARAAFWPKISLTGNLGTASA 341

Query: 83  KLDEPSITSNRSGNSWSATLAQPIFRADRWFQLQAAEAVNEQAALELSATEQNLILQTAQ 142
            L +   +S     S   +L+ P+F  D W      E+   Q  + ++A E++  +QTA 
Sbjct: 342 SLGD-LFSSGSLAWSVGPSLSVPLF--DFWRNEATLESAKVQREIAVAAYEKS--IQTAF 396

Query: 143 NYFA-----------VLRAQDNLAATKAEEAAFKRQLDQSNERFDVGLSDKTDVLQSQAS 191
              A            LRAQ +L A   E  A  R       R+D G+ +    L SQ S
Sbjct: 397 REVADALAAKGTLGDQLRAQQDLVAATQESYALSR------NRYDQGIDNYLSTLDSQRS 450

Query: 192 YDTARANRI 200
              A+ + I
Sbjct: 451 LYAAQQDLI 459