Pairwise Alignments

Query, 477 a.a., Outer membrane efflux protein from Pseudomonas putida KT2440

Subject, 435 a.a., outer membrane protein TolC (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  251 bits (641), Expect = 3e-71
 Identities = 160/449 (35%), Positives = 250/449 (55%), Gaps = 21/449 (4%)

Query: 6   SLAIAVSCASNGVVWAADVPSTVKTDLVSVYQEAVDNNADLAAARADYGARREVVPQARA 65
           SL +A++ A++     AD       DL+ +YQ+A+ N+  +  A+A   A  E + Q RA
Sbjct: 7   SLCVALTLAASAHAVQAD-------DLLQIYQQALTNDPLVLQAQAQRNALFEKIEQNRA 59

Query: 66  GLLPNLSAGAEMMNTRTKLDEPSITSNRSGNSWSATLAQPIFRADRWFQLQAAEAVNEQA 125
            LLP +SA    +      ++P   S  SG + S  L Q I+    W  L  AE    QA
Sbjct: 60  PLLPTISAN---VGYDKAWNDPRDDS--SGLTGSLKLNQVIYDHSAWVGLSLAEKAASQA 114

Query: 126 ALELSATEQNLILQTAQNYFAVLRAQDNLAATKAEEAAFKRQLDQSNERFDVGLSDKTDV 185
               ++  QNLI +  + YF VL A+DN     AE+ A +RQL+Q+ +RF VGL+  TDV
Sbjct: 115 DSTYASALQNLISRVTKAYFDVLTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITDV 174

Query: 186 LQSQASYDTARANRIIAERQVQDAFEALVTLTNREYTSIQGV-VHSLPVQVPTPNDAKAW 244
            ++QA YD A A+ I+AE  + +++EAL  +T  ++ ++  +  +      P P+ +  W
Sbjct: 175 HEAQAQYDLASASEILAENTLANSYEALREITGIDHKALNVLDTNRFSAVTPAPSSSTDW 234

Query: 245 VETAGRQNLNLLATNYAVSAAEETLRQRKAGHAPTLDAVAKYQKGDNDSLGFTNPSQLGV 304
           ++ A   +++L+        A+ET+   KAGH P+L   A Y KG    LG  +      
Sbjct: 235 LKIAETNSVDLMTQRIGKDIAQETISLYKAGHMPSLSLNAGYAKGLEQKLGDASEP---- 290

Query: 305 RYSGDVEQTSVGLQLNIPIYSGGLTSSQVREAYQRLSQSEQQRESLRRQVVENTRNLHRA 364
               D +  SVG+ L++PI+ G   SSQV+EA  +  Q+ ++ E   R VV+N RN +  
Sbjct: 291 ----DFDNMSVGINLSVPIFEGFKVSSQVKEAQFQYVQASERLEQTYRGVVKNVRNNYNN 346

Query: 365 VNTDVEQVQARKQSIISNQSALEATEIGYQVGTRNIVDVLDAQRQLYTSVRDYNNSRYDY 424
           V   +  ++A +QS+IS++SAL+AT+ G++VGTR IVDVL+  R LY S R  +++RY Y
Sbjct: 347 VGASISSIRAYEQSVISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSY 406

Query: 425 ILDNLSLKQAAGTLSPQDLQDLKRYLKPD 453
           I   ++LKQAAGTL+  D+  +   LK +
Sbjct: 407 INSIVALKQAAGTLNEDDVIAINNGLKAE 435