Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

Subject, 792 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Pseudomonas fluorescens FW300-N2E2

 Score =  370 bits (950), Expect = e-106
 Identities = 220/544 (40%), Positives = 317/544 (58%), Gaps = 21/544 (3%)

Query: 16  VLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHARSVQVILHADHSLEV 71
           VL GLD VRKRPGMY     D S  +H+  EV+DNS+DEALAGH   + +I+H D S+ V
Sbjct: 1   VLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITV 60

Query: 72  SDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVNALSTQVR 131
            D+GRG+PVD+H EEGVS  E+I+T LHAGGKF + +Y+ SGGLHGVG+SVVNALS ++ 
Sbjct: 61  RDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELV 120

Query: 132 VRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDPKYFDSPKFSISRLKHV 191
           + V+R G  ++ T+  G   + + +VG      TGT ++F    + F +  FS   L   
Sbjct: 121 LTVRRSGKIWEQTYIHGVPQAPMAIVGD--SETTGTQIHFKASSETFKNIHFSWDILAKR 178

Query: 192 LKAKAVLCPGLLVSFEDKASGEKVEWHYEDGLRSYLVDSVNEFQRLPDEPFCGSLAGNKE 251
           ++  + L  G+ +  +D+ SG++  + YE GLR++ V+ +N  +   ++ F  ++     
Sbjct: 179 IRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAF-VEYLNTNKTPVNQVFHFNVQREDG 237

Query: 252 -AVDWALLWLPEGGDSIQES---YVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPR 307
             V+ AL W     DS  E+   + N IP   GGTH+ G R  L   +  + E   L  +
Sbjct: 238 IGVEIALQW----NDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKK 293

Query: 308 -GVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAAAFVSGVVKDAFSLWLNAHP 366
             V    +D  E +T ++S+K+ DP+FS QTK++L S E    V   +   FS +L  +P
Sbjct: 294 HKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENP 353

Query: 367 ELGMQLAELAISNAGRR---LKASKKVERKRITQGPALPGKLADCAGQDPMRAELFLVEG 423
                +    I  A  R    KA +   RK       LPGKLADC  +DP  +EL+LVEG
Sbjct: 354 NEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEG 413

Query: 424 DSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAVAIGVDPGATD--L 481
           DSAGGSAKQ R++  QAILPL+GKILN  +    ++++SQEV  +  A+G   G  +  +
Sbjct: 414 DSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNI 473

Query: 482 AQLRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAGHVYVAMPPLYRIDLGKEIYY 541
            +LRY  I I+ DAD DG HI TLL   F +    L+E G++Y+A PPLY++  GK+  Y
Sbjct: 474 DKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQY 533

Query: 542 ALDE 545
             D+
Sbjct: 534 IKDD 537



 Score = 55.5 bits (132), Expect = 9e-12
 Identities = 26/60 (43%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 552 LDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDVEATCELMDKLL 611
           L+ L+AE  + +  + R+KGLGEMNP QL ETTMDP +RR++++T++D     ++ + L+
Sbjct: 711 LEWLMAESTK-RHTIQRYKGLGEMNPDQLWETTMDPGSRRMLKVTIEDAIGADQIFNTLM 769