Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

Subject, 804 a.a., DNA gyrase, B subunit from Pseudomonas stutzeri RCH2

 Score =  367 bits (942), Expect = e-105
 Identities = 220/564 (39%), Positives = 325/564 (57%), Gaps = 22/564 (3%)

Query: 9   YNADAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHARSVQVILH 64
           Y++ +I+VL GLD VRKRPGMY     D +  +H+  EV+DNS+DEALAGH   + + +H
Sbjct: 7   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDISITIH 66

Query: 65  ADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVN 124
            D S+ V D+GRG+PVDIH EEGVS  E+I+T LHAGGKF + +Y+ SGGLHGVG+SVVN
Sbjct: 67  TDESITVRDNGRGIPVDIH-EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 125

Query: 125 ALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDPKYFDSPKFS 184
           ALS ++ + ++R+G  ++  +  G   + L  VG     ++GT ++F P  + F +  FS
Sbjct: 126 ALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGETD--SSGTQIHFKPSAETFQNIHFS 183

Query: 185 ISRLKHVLKAKAVLCPGLLVSFEDKASGEKVEWHYEDGLRSYLVDSVNEFQRLPDEPFCG 244
              L   L+  + L  G+ +   D+ + ++  + YE GL ++ V  +N  +   +E F  
Sbjct: 184 WDILAKRLRELSFLNSGVGIVLRDERTAKEELFKYEGGLSAF-VAYLNTNKTPVNEVFHF 242

Query: 245 SLAGNKEA-VDWALLWLPEGGDSIQES---YVNLIPTAQGGTHVNGLRQGLLDAMREFCE 300
           ++  +    V+ AL W     DS  E+   + N IP   GGTH+ G R  L   +  + E
Sbjct: 243 NVQRDDGVGVEVALQW----NDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNSYIE 298

Query: 301 FRNLLPRG-VKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAAAFVSGVVKDAFS 359
              L  +  +    +D  E +T ++S+K+ DP+FS QTK++L S E    V   +   F+
Sbjct: 299 QEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKHFA 358

Query: 360 LWLNAHPELGMQLAELAISNAGRR---LKASKKVERKRITQGPALPGKLADCAGQDPMRA 416
            +L  HP     +    I  A  R    KA +   RK       LPGKLADC  +DP  +
Sbjct: 359 DFLLEHPSEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALS 418

Query: 417 ELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAVAIGVDP 476
           EL++VEGDSAGGSAKQ R+++ QAILPL+GKILN  +    ++++SQEV  +  A+G   
Sbjct: 419 ELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 478

Query: 477 GATD--LAQLRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAGHVYVAMPPLYRID 534
           G  +  + +LRY  I I+ DAD DG HI TLL   F +    L+E G+VY+A PPLY++ 
Sbjct: 479 GRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQPPLYKVK 538

Query: 535 LGKEIYYALDEAERDGILDRLVAE 558
            GK+  Y  D+   +  L +   E
Sbjct: 539 RGKQEQYIKDDEAMEEYLTQSALE 562



 Score = 58.2 bits (139), Expect = 1e-12
 Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 552 LDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDVEATCELMDKLL 611
           L+ L+ E  R +  V R+KGLGEMNP QL ETTMDPN RR++++T++D     ++ + L+
Sbjct: 723 LEWLMTEGTR-RHSVQRYKGLGEMNPDQLWETTMDPNVRRMLKVTIEDAIGADQIFNTLM 781

Query: 612 AKKRAGDRKSWLET 625
                  R+ ++ET
Sbjct: 782 G-DAVEPRRDFIET 794