Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

Subject, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

 Score =  363 bits (933), Expect = e-104
 Identities = 215/552 (38%), Positives = 318/552 (57%), Gaps = 21/552 (3%)

Query: 9   YNADAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHARSVQVILH 64
           Y++ +I+VL GLD VRKRPGMY     D +  +H+  EV+DNS+DEALAG+ + + V +H
Sbjct: 5   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVTIH 64

Query: 65  ADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVN 124
            D+S+ VSDDGRG+P ++HPEE VS  E+I+T LHAGGKF + +Y+ SGGLHGVG+SVVN
Sbjct: 65  EDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124

Query: 125 ALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDPKYFDSPKFS 184
           ALS +V + + R G  +  T+  G   + L VVG      TGT+V F P  + F + +F 
Sbjct: 125 ALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET--ERTGTTVRFWPSAQTFTNIEFH 182

Query: 185 ISRLKHVLKAKAVLCPGLLVSFEDKASGEKVE-WHYEDGLRSYLVDSVNEFQRLPDEPF- 242
              L   L+  + L  G+ +   D+   +K + + YE G+++++         + ++ F 
Sbjct: 183 YDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVFH 242

Query: 243 CGSLAGNKEAVDWALLWLPEGGDSIQES---YVNLIPTAQGGTHVNGLRQGLLDAMREFC 299
                 +  +V+ A+ W     D  QE+   + N IP   GGTH+ G R  L   +  + 
Sbjct: 243 FNQEREDGISVEVAMQW----NDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYM 298

Query: 300 EFRNLLPRG-VKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAAAFVSGVVKDAF 358
           +      +     + +D  E +T V+S+K+ DP+FS QTK++L S E  + V   + +  
Sbjct: 299 DKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKL 358

Query: 359 SLWLNAHPELGMQLAELAISNAGRR---LKASKKVERKRITQGPALPGKLADCAGQDPMR 415
           + +L  +P     +    I  A  R    KA +   RK       LPGKLADC  +DP  
Sbjct: 359 ADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPAL 418

Query: 416 AELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAVAIGVD 475
           +EL++VEGDSAGGSAKQ R+++ QAILPL+GKILN  +    ++L+SQEV  +  A+G  
Sbjct: 419 SELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 478

Query: 476 PGATDL--AQLRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAGHVYVAMPPLYRI 533
            G  +    +LRY  I I+ DAD DG HI TLL   F +    L+E G++Y+A PPLY++
Sbjct: 479 IGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKV 538

Query: 534 DLGKEIYYALDE 545
             GK+  Y  DE
Sbjct: 539 KKGKQEQYIKDE 550



 Score = 67.0 bits (162), Expect = 3e-15
 Identities = 35/74 (47%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 552 LDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDVEATCELMDKLL 611
           LD L+ E +RG   + R+KGLGEMNP QL ETTMDP TRR++Q+T++D     EL   L+
Sbjct: 724 LDWLIKESRRGL-SIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLM 782

Query: 612 AKKRAGDRKSWLET 625
              +   R++++ET
Sbjct: 783 G-DQVEPRRAFIET 795