Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

Subject, 645 a.a., DNA gyrase subunit B from Synechococcus elongatus PCC 7942

 Score =  442 bits (1137), Expect = e-128
 Identities = 259/641 (40%), Positives = 368/641 (57%), Gaps = 26/641 (4%)

Query: 6   ASAYNADAIEVLSGLDPVRKRPGMYTDTSRP---NHLAQEVIDNSVDEALAGHARSVQVI 62
           A+ Y A  I+VL GL+PVRKRPGMY  ++ P   +HL  EV+DN+VDEALAG+  ++ V 
Sbjct: 2   ANEYGASQIQVLEGLEPVRKRPGMYIGSTGPKGLHHLVYEVVDNAVDEALAGYCNTIDVR 61

Query: 63  LHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISV 122
           L  D S +V+D+GRG+P DIHP+ G S +E +LT LHAGGKF    Y+ SGGLHGVG+SV
Sbjct: 62  LLEDGSCQVTDNGRGIPTDIHPQTGKSALETVLTILHAGGKFGGGGYKVSGGLHGVGVSV 121

Query: 123 VNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDPKYF-DSP 181
           VNALS  V V V R+G  +Q  F  G    EL+V      R  GT V F PD   F ++ 
Sbjct: 122 VNALSEYVEVTVWREGKTHQQRFEQGNPIGELQVAPDADDRR-GTQVRFKPDATIFSETT 180

Query: 182 KFSISRLKHVLKAKAVLCPGLLVSFEDKA-------SGEKVEWHYEDGLRSYLVDSVNEF 234
           +F    L   LK  A L  G+ + F D+           +  +++E G+R Y+     + 
Sbjct: 181 EFDYGTLASRLKELAYLNAGVRIDFTDERLQLTKNHEPHQETYYFEGGIREYVAYMNTDK 240

Query: 235 QRLPDEPFCGSLAGNKEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHVNGLRQGLLDA 294
           Q L  E        +   V+ AL W  +        + N I T  GGTH+ GL+  L   
Sbjct: 241 QALHSEIIFVQSEKDGVQVEAALQWCVDAYSDNILGFANNIRTIDGGTHIEGLKTVLTRT 300

Query: 295 MREFCEFRN-LLPRGVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAAAFVSGV 353
           M      RN        L+ E++ E +T ++S+K+ DP+F GQTK +L + E    V  +
Sbjct: 301 MNTIARKRNKRKDADNNLSGENIREGLTAIVSVKVPDPEFEGQTKTKLGNTEVRGIVDTL 360

Query: 354 VKDAFSLWLNAHPELGMQLAELAI-----SNAGRRLKASKKVERKRITQGPALPGKLADC 408
           V +  + +L  HP +   + E AI     + A RR  A + V RK + +   LPGKLADC
Sbjct: 361 VGETLTEYLEFHPSVADLILEKAIQAFNAAEAARR--ARELVRRKSVLESSTLPGKLADC 418

Query: 409 AGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNI 468
           + +DP  +E+F+VEGDSAGGSAKQ RD+ FQAILPLRGKILN  + D  ++  + E+  +
Sbjct: 419 SSRDPGESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQAL 478

Query: 469 --AVAIGVDPGATDLAQLRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAGHVYVA 526
             A+ +G+     D +QLRY +I I+ DAD DG HI TLL   F ++ R+L+E G++Y+A
Sbjct: 479 ITALGLGIKGEEFDASQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLLEQGYIYIA 538

Query: 527 MPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMD 586
            PPLY+++ G+  YY  +E E   + +R+    +     + RFKGLGEM P QL ETTMD
Sbjct: 539 CPPLYKLERGRNHYYCYNERE---LQERIATFPENANYTIQRFKGLGEMMPQQLWETTMD 595

Query: 587 PNTRRLVQLTLDDVEATCELMDKLLAKKRAGDRKSWLETKG 627
           P TR + ++ ++D  A  + +  +L   R   R+ ++ET G
Sbjct: 596 PETRTMKRVEIEDA-AEADRIFTILMGDRVQPRREFIETYG 635