Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

Subject, 811 a.a., DNA gyrase subunit B from Sinorhizobium meliloti 1021

 Score =  414 bits (1065), Expect = e-120
 Identities = 240/554 (43%), Positives = 330/554 (59%), Gaps = 24/554 (4%)

Query: 9   YNADAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHARSVQVILH 64
           Y AD+I+VL GLD VRKRPGMY     D S  +H+  EV+DN++DEALAGHA  V V L+
Sbjct: 15  YGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHADIVTVTLN 74

Query: 65  ADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVN 124
            D S+ V+D+GRG+P DIH EEGVS  E+I+T+LHAGGKF   +Y+ SGGLHGVG+SVVN
Sbjct: 75  PDGSVTVTDNGRGIPTDIHREEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVN 134

Query: 125 ALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDPKYFDSPKFS 184
           ALS  ++++++R G  ++M+F  G     L+V G  G   TGT V F+P  + F + +F 
Sbjct: 135 ALSVSLKLKIRRAGKIHEMSFTHGVADGPLKVTGDAG-GETGTEVTFTPSEQTFSNIEFE 193

Query: 185 ISRLKHVLKAKAVLCPGLLVSFEDKASGE--KVEWHYEDGLRSYLVDSVNEFQRLPDEPF 242
              L+H L+  A L  G+ +   DK   +  + E  Y+ GL +++       + L  +P 
Sbjct: 194 FGTLEHRLRELAFLNSGVRIVLTDKRHSDIRREEMMYDGGLEAFVAYLDRAKKPLVQKPV 253

Query: 243 CGSLAGNKE--AVDWALLWLPEGGDSIQES---YVNLIPTAQGGTHVNGLRQGLLDAMRE 297
             S+ G K+   V+ A+ W     DS  E+   + N IP   GGTH+ G R  L   +  
Sbjct: 254 --SIRGEKDGITVEVAMWW----NDSYHENVLCFTNNIPQRDGGTHMAGFRGALTRQITS 307

Query: 298 FCEFRNLLPR-GVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAAAFVSGVVKD 356
           + +   +  +  V L  +D  E +T VLS+K+ DP+FS QTK++L S E    V  +V +
Sbjct: 308 YADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNE 367

Query: 357 AFSLWLNAHPELGMQLAELAISNAGRR---LKASKKVERKRITQGPALPGKLADCAGQDP 413
           A S+WL  HP     L    +  A  R    KA +   RK      +LPGKLADC+ +DP
Sbjct: 368 ALSVWLEEHPSDAKILVGKVVEAAAAREAARKARELTRRKGALDISSLPGKLADCSERDP 427

Query: 414 MRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAVAIG 473
            ++ELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  +  A+G
Sbjct: 428 AKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 487

Query: 474 VDPGATDL--AQLRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAGHVYVAMPPLY 531
              G  +    +LRY KI I+ DAD DG HI TLL   F +    L+E GH+Y+A PPLY
Sbjct: 488 TSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPLY 547

Query: 532 RIDLGKEIYYALDE 545
           ++  GK + Y  DE
Sbjct: 548 KVARGKSVQYLKDE 561



 Score = 52.4 bits (124), Expect = 8e-11
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 523 VYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRE 582
           VY A P L R D  +EI      +    +LD + A  ++G   + R+KGLGEMN  QL E
Sbjct: 707 VYGAPPVLRRRDGTQEI------SGPRALLDAIFAAGRKGLT-MQRYKGLGEMNAEQLWE 759

Query: 583 TTMDPNTRRLVQLTLDDVEATCELMDKLL 611
           TT+DPN R L+Q+ + D      L  +L+
Sbjct: 760 TTLDPNVRSLLQVKVTDATDADGLFSRLM 788