Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

Subject, 652 a.a., DNA topoisomerase 4 subunit B from Phaeobacter inhibens DSM 17395

 Score =  458 bits (1179), Expect = e-133
 Identities = 259/632 (40%), Positives = 383/632 (60%), Gaps = 23/632 (3%)

Query: 1   MANPSASAYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAR 57
           ++ P++  Y+A +IEVL GL+PVR+RPGMY   TD    +H+  E++DNS+DEA+AGHA 
Sbjct: 6   LSTPASDTYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHAN 65

Query: 58  SVQVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGLH 116
            ++V LHAD+++ +SD+GRG+P+D HP+    S +E+IL  LHAGGKFS K YQ SGGLH
Sbjct: 66  RIEVTLHADYAVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLH 125

Query: 117 GVGISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDPK 176
           GVG SVVNALS  + V+V ++   ++  F+ G     +E +G+   +  GT V F  D +
Sbjct: 126 GVGSSVVNALSDSMVVQVAKNKELFEQRFSRGIPQGPVEKIGAAPNKR-GTFVTFHADEQ 184

Query: 177 YFDSPKFSISRLKHVLKAKAVLCPGLLVSF----EDKASGEKVEWHYEDGLRSYLVDSVN 232
            F S +F   RL  ++++KA L  G+ + +    +D  +  +  +H+  GL+ YL + + 
Sbjct: 185 IFGSHRFKPKRLFTLVRSKAYLFSGVEIRWKSEIDDNETPTEATFHFPGGLKDYLTEVLG 244

Query: 233 EFQRLPDEPFCGSLAGNKEA-----VDWALLWLPEGGDSIQESYVNLIPTAQGGTHVNGL 287
           +     ++PF G +   ++      V+WA+ W P   D   +SY N +PT +GGTHV G 
Sbjct: 245 KSSVYAEQPFAGKVEFREKFNAPGYVEWAINWTPSR-DGFTQSYCNTVPTPEGGTHVAGF 303

Query: 288 RQGLLDAMREFCEFRNLLPRGVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAA 347
              +L  ++ + +      +   +  ED+      ++S  + DP F GQTK+RLS+  AA
Sbjct: 304 WAAILKGIKAYGDLVGN-KKAASITREDLMAGGCALVSCFIADPAFVGQTKDRLSTEIAA 362

Query: 348 AFVSGVVKDAFSLWLNAHPELGMQLAELAISNAGRRL--KASKKVERKRITQGPALPGKL 405
             V   V+D F  WL A  +    + +  +  A  RL  K  K+ +RK  T+   LPGKL
Sbjct: 363 KMVENSVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRKQEKETQRKSATKKLRLPGKL 422

Query: 406 ADCAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEV 465
            DC  +D    ELF+VEGDSAGGS K AR++  QA+LPL+GKILN       ++  + E+
Sbjct: 423 TDCTSKDRAGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKIGTNAEI 482

Query: 466 HNIAVAIGVDPGAT-DLAQLRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAGHVY 524
            ++  A+GV  G   +L  LRY KI I+ DAD DG HIA+LL   F    R L++ GH+Y
Sbjct: 483 RDLCEALGVGTGTKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLY 542

Query: 525 VAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETT 584
           +A PPL+R+  G    Y LDEAERD  L++ +  K  GK  V+RFKGLGEM+   L+ETT
Sbjct: 543 LACPPLFRLTQGARRVYCLDEAERDLWLEKGLGGK--GKIDVSRFKGLGEMDAKDLKETT 600

Query: 585 MDPNTRRLVQLTLDDVE--ATCELMDKLLAKK 614
           MDP TR+L+++T+D+ E   T EL+++L+ KK
Sbjct: 601 MDPTTRKLIRVTIDEDEPGETGELVEQLMGKK 632