Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

Subject, 657 a.a., type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit from Dechlorosoma suillum PS

 Score =  607 bits (1565), Expect = e-178
 Identities = 326/658 (49%), Positives = 435/658 (66%), Gaps = 31/658 (4%)

Query: 1   MANPSASAYNADAIEVLSGLDPVRKRPGMYTDTSRPNHLAQEVIDNSVDEALAGHARSVQ 60
           M+NPS   YNA +I VL GL+PV++RPGMYT T  P H+ QEVIDN+ DEA+AG A+S+ 
Sbjct: 1   MSNPSD--YNASSITVLKGLEPVKQRPGMYTRTENPLHIIQEVIDNAADEAIAGFAKSIL 58

Query: 61  VILHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKN----YQFSGGLH 116
           V +H D S+ V+D+GRG+PV++HP E    VE++ T+LHAGGKF NK     Y FSGGLH
Sbjct: 59  VTVHVDGSISVADNGRGIPVELHPVENAPTVEVVFTRLHAGGKF-NKGAGGAYSFSGGLH 117

Query: 117 GVGISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDPK 176
           GVG+SV NALST++ V V R+G  +++ FA G     L  +G   K+ +GT V   PD K
Sbjct: 118 GVGVSVTNALSTRLEVEVAREGGMHRLVFAAGDVVEPLARIGDAPKKASGTRVRAWPDAK 177

Query: 177 YFDSPKFSISRLKHVLKAKAVLCPGLLVSFEDKASGEKVEWHYEDGLRSYLVDSVNEF-- 234
           YFDSP   +  L+H+L++KAVL PG+ V+   + SGE  EW Y+DG+R YL + ++    
Sbjct: 178 YFDSPTIPMGELEHILRSKAVLLPGVAVTLHIERSGETKEWAYKDGMRGYLAELLDGTDL 237

Query: 235 -------QRLPDEPFCGSLAGNKEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHVNGL 287
                  ++   +P  G      E   WA+ W  EG  + +ESYVNLIPT  GGTH +GL
Sbjct: 238 VIPMIVGEKYAGKPTNGDGFAEGEGAAWAIAWTEEGALA-RESYVNLIPTPGGGTHESGL 296

Query: 288 RQGLLDAMREFCEFRNLLPRGVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAA 347
           R G+  A++ F +  +LLP+GVKL PEDV+ R +F+LS ++ DP F GQTK+RL+SR+A 
Sbjct: 297 RDGIFQAVKSFVDMHSLLPKGVKLLPEDVFGRASFLLSARILDPSFQGQTKDRLNSRDAV 356

Query: 348 AFVSGVVKDAFSLWLNAHPELGMQLAELAISNAGRRLKASKKVERKRITQGPALPGKLAD 407
             VS + +D F LWLN H E G +LAEL+I  A  R ++++KVE+K+ +    LPGKL D
Sbjct: 357 KLVSAMFRDTFELWLNEHVEYGKKLAELSIKQAQSRQRSAQKVEKKKGSGVAVLPGKLTD 416

Query: 408 CAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHN 467
           C   D  R ELFLVEGDSAGGSAKQ RDKEFQA+LPLRGK+ N+WEV+   + A+ E+HN
Sbjct: 417 CESDDIERNELFLVEGDSAGGSAKQGRDKEFQALLPLRGKVQNSWEVEPDRLYANVEIHN 476

Query: 468 IAVAIGVD----PGATDLAQLRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAGHV 523
           IAVAIGVD       T +  LRYGK+ I++DAD DG HI  LL  LF +HF  L+  G++
Sbjct: 477 IAVAIGVDHHTLESDTSIDGLRYGKVIIMSDADVDGSHIQCLLLTLFFRHFPKLIANGNI 536

Query: 524 YVAMPPLYRIDL---GK----EIYYALDEAERDGILDRLVAEK-KRGKPQVTRFKGLGEM 575
           YVA PPL+R+D+   GK       YALDE E + + D+LV E  K     ++RFKGLGEM
Sbjct: 537 YVAKPPLFRVDVPGQGKNRPPRKIYALDENELEAVKDKLVKEGIKLEALSISRFKGLGEM 596

Query: 576 NPPQLRETTMDPNTRRLVQLTLDD--VEATCELMDKLLAKKRAGDRKSWLETKGNLAE 631
           +  QL +TT++P+TRRLV++   D  +E T   M+ L+ K  A  R+ WLE  GN  E
Sbjct: 597 SSEQLWDTTLNPDTRRLVRVEFGDYPMEETIAKMNMLMGKGEASSRREWLEVHGNEVE 654