Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

Subject, 830 a.a., DNA gyrase, B subunit from Dechlorosoma suillum PS

 Score =  372 bits (956), Expect = e-107
 Identities = 230/589 (39%), Positives = 334/589 (56%), Gaps = 43/589 (7%)

Query: 6   ASAYNADAIEVLSGLDPVRKRPGMY----TDTSRPNHLAQEVIDNSVDEALAGHARSVQV 61
           A AY   +I++L GL+ VRKRPGMY    +D +  +HL  EV+DNS+DEALAGH   + V
Sbjct: 15  APAYGESSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDITV 74

Query: 62  ILHADHSLEVSDDGRGMP----VDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHG 117
            +HAD+S+ V+D+GRG+P    +D   E   S  E+ LT+LHAGGKF+  +Y+ SGGLHG
Sbjct: 75  TIHADNSISVTDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHG 134

Query: 118 VGISVVNALSTQVRVRVKRDGNEYQMTF------------ADGFKASELEVVGSVGKRNT 165
           VG+S VNALS  +R+ ++RDG  + + F             DGF+ S L+V+G   KR  
Sbjct: 135 VGVSCVNALSKWLRLTIRRDGKRHFIEFNRGVPVERVIEVRDGFEVSPLKVLGDTDKR-- 192

Query: 166 GTSVYFSPDPKYFDSPKFSISRLKHVLKAKAVLCPGLLVSFEDKASGEKVEWHYEDGLRS 225
           GT V+F  D + F + +F    L   L+  + L  G+ +   D+ +G++  + +  G++S
Sbjct: 193 GTEVHFLADDEIFGTVEFHYEILAKRLRELSFLNNGVSIRLVDQRNGKEELFAFAGGVQS 252

Query: 226 YLVDSVNEFQRLPDEPFCGSLAGNKEA-------VDWALLWLPEGGDSIQES---YVNLI 275
           + V+ +N  + +       S    K         V+ A+ W     DS QE    + N I
Sbjct: 253 F-VEYINRTKSVLHPSIFYSAGEAKVGDTGVTIGVEVAMQW----NDSYQEQVLCFTNNI 307

Query: 276 PTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLAPEDVWERITFVLSMKMQDPQFS 334
           P + GGTH+ GLR  +   + ++ E   +  +  V++  +D+ E +  VLS+KM DP+F+
Sbjct: 308 PQSDGGTHLTGLRAAMTRIINKYIEENEIAKKAKVEITGDDMREGLACVLSVKMPDPKFA 367

Query: 335 GQTKERLSSREAAAFVSGVVKDAFSLWLNAHPELGMQLAELAISNAGRR---LKASKKVE 391
            QTK +L S EA   V  VV    + +L   P     +    +  A  R    KA +   
Sbjct: 368 SQTKMKLVSSEARPAVEEVVAAKLTEFLLERPVDAKTICGKIVEAARARDAARKAREMTR 427

Query: 392 RKRITQGPALPGKLADCAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNT 451
           RK I  G  LPGKLADC  +DP + EL+LVEGDSAGGSAKQ RD++FQAILPL+GKILN 
Sbjct: 428 RKGILDGVGLPGKLADCQEKDPTQCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNV 487

Query: 452 WEVDGGEVLASQEVHNIAVAIGVDPGATDL--AQLRYGKICILADADSDGLHIATLLCAL 509
            +    ++++SQE+  +  A+G   G  +    +LRY +I I+ DAD DG HI TLL   
Sbjct: 488 EKARFDKLISSQEIATLITALGTGIGKDEYKPEKLRYHRIIIMTDADVDGAHIRTLLLTF 547

Query: 510 FVQHFRTLVEAGHVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAE 558
           F +    LVE GH+Y+A PPLY++  GK   Y  D+ E    L ++  E
Sbjct: 548 FYRQMPELVERGHIYIAQPPLYKVKHGKTERYLKDDHEYQQFLLQMAME 596



 Score = 55.1 bits (131), Expect = 1e-11
 Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 568 RFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDVEATCELMDKLLAKKRAGDRKSWLETKG 627
           R+KGLGEMNP QL ETTMDPN RRL+++ +DD     E+   L+  +    R++++E+  
Sbjct: 764 RYKGLGEMNPEQLWETTMDPNVRRLLRVGIDDAIGADEVFTTLMG-ELVEPRRNFIESNA 822

Query: 628 NLAE 631
             A+
Sbjct: 823 LRAQ 826