Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

Subject, 798 a.a., DNA gyrase, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  410 bits (1053), Expect = e-118
 Identities = 244/583 (41%), Positives = 346/583 (59%), Gaps = 16/583 (2%)

Query: 1   MANPSASAYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAR 57
           M   + + Y AD+I +L GL  VRKRP MY   TD    +HL  EV+DNS+DEA+AG   
Sbjct: 1   MTTGTGNNYTADSITILEGLSAVRKRPAMYIGSTDARGLHHLVYEVVDNSIDEAMAGFCS 60

Query: 58  SVQVILHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHG 117
            V V LH D+S+ VSD+GRG+PVD+HP+EG   VE+++TKLHAGGKF N  Y+ SGGLHG
Sbjct: 61  KVVVKLHLDNSVTVSDNGRGIPVDMHPKEGRPAVEVVMTKLHAGGKFDNNAYKVSGGLHG 120

Query: 118 VGISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDPKY 177
           VG+S VNALS  + VRVKRDG  Y   +A G    +L V+G+      GT+V F PD + 
Sbjct: 121 VGVSCVNALSEWLEVRVKRDGQRYGQRYARGVPQEDLRVLGA--SEGHGTTVRFKPDEEI 178

Query: 178 FDSPKFSISRLKHVLKAKAVLCPGLLVSFEDKASGEKVEWHYEDGLRSYLVDSVNEFQRL 237
           F++ +FS   L+   +  + L  GL + F D+ SGE   +  E G+R ++ D +N  +  
Sbjct: 179 FETNQFSYETLRKRFEELSYLNRGLEIEFIDERSGESHTFFAEGGIRQFVKD-LNSGETG 237

Query: 238 PDEPFCGSLAGNKEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHVNGLRQGLLDAMRE 297
                 G    +   VD+AL +     +++  ++ N I T +GGTH+ G +  L  A+  
Sbjct: 238 IHPIVAGEGKTDGVVVDFALQYNAGYKENVL-TFANNIRTKEGGTHLAGFKTALTRAING 296

Query: 298 FCEFRNLLP---RGVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAAAFVSGVV 354
           + + +  L    +G  L+ +DV E +T V+S+K+  PQF GQTK +L + E A  V+G+V
Sbjct: 297 YVKGQADLTKKMKGTALSGDDVREGLTAVVSVKLPQPQFEGQTKTKLGNSEIAGIVAGIV 356

Query: 355 KDAFSLWLNAHPELGMQLAELAISNAGRR---LKASKKVERKRITQGPALPGKLADCAGQ 411
            D  ++    +P+    + + A+  A  R    +A + V RK      ALPGKLADC  +
Sbjct: 357 YDRLNVHFEENPKDVRLIIDKAVDAARARDAARRAKELVRRKGALSDNALPGKLADCQSK 416

Query: 412 DPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAVA 471
           DP  +ELF+VEGDSAGGSAKQ RD   QAILPLRGKILNT      ++LA++EV  +  A
Sbjct: 417 DPALSELFIVEGDSAGGSAKQGRDPSTQAILPLRGKILNTERTRFDKMLANKEVKALITA 476

Query: 472 IGVDPGA--TDLAQLRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAGHVYVAMPP 529
           +G   G   TD  +LRY KI I+ DAD DG HI TLL   F + ++ L+E+G++Y+A PP
Sbjct: 477 MGAGIGEDDTDYDKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQYQKLIESGYLYIAQPP 536

Query: 530 LYRIDLGKEIYYALDEAERDG-ILDRLVAEKKRGKPQVTRFKG 571
           LYR    +   +  D+AE +  +L R+  + +   P    FKG
Sbjct: 537 LYRAHNSRMERFIKDDAELNNFLLTRVSEDVEVRTPGGCSFKG 579



 Score = 57.0 bits (136), Expect = 3e-12
 Identities = 26/63 (41%), Positives = 41/63 (65%)

Query: 552 LDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDVEATCELMDKLL 611
           L R+V E+ R    + R+KGLGEMNP QL  TTM+P  R L+Q++++D E   +  ++L+
Sbjct: 716 LQRMVFEEARRGLNIQRYKGLGEMNPEQLWVTTMNPENRTLLQVSIEDAEEASDAFEQLM 775

Query: 612 AKK 614
             +
Sbjct: 776 GDR 778