Pairwise Alignments

Query, 752 a.a., DNA topoisomerase IV subunit A from Pseudomonas putida KT2440

Subject, 889 a.a., DNA gyrase subunit A (EC 5.99.1.3) from Pseudomonas fluorescens FW300-N1B4

 Score =  424 bits (1091), Expect = e-123
 Identities = 283/779 (36%), Positives = 430/779 (55%), Gaps = 80/779 (10%)

Query: 16  SLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADAKHKKSARTVG 75
           ++ D  +Q+YL+Y+M VI+ RALP   DGLKPV RR+++AMSELG D +  +KKSAR VG
Sbjct: 12  NIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPYKKSARVVG 71

Query: 76  DVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRY 135
           DV+GK+HPHGD+A Y+ +V MAQPFS RY LVDGQGN+G+ D   + AAMRYTE R+++ 
Sbjct: 72  DVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNA-AAMRYTEVRMTKL 130

Query: 136 AEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIAVGMATDVPPHNLREV 195
           A  LL+++ + TVDWVPN+DGT   PAV+P R+PN+L+NG++GIAVGMAT++PPHNL EV
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 196 ASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYESGRGSIRMRAVYRVE 255
              C+ L+D P+ T+++L ++I GPD+PT A I+  RA I++ Y +GRG I MRA   +E
Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPT-AAIINGRAGIIEAYRTGRGRIYMRARSMIE 249

Query: 256 DGD-------IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRIVIIP 308
           D D       IV+T LP+Q++ A+++E+IA  ++ KKL  + +LRDESD +   R+VI  
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDG-MRVVIEL 308

Query: 309 RSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTLLVEWLEFRTNTVRRR 368
           R   V  + ++ +L+A T L++ + +N+ +  +DGRP++ NL+ LL  ++  R   V RR
Sbjct: 309 RRGEVP-EVILNNLYAQTQLQAVFGINI-VALIDGRPRILNLKDLLEAFVRHRREVVTRR 366

Query: 369 LQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYP---KQALIE------------- 412
               L K  +R H+L+G   A  N+D VI +I+    P   K+ALI              
Sbjct: 367 TVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTAWESSAVVAMVE 426

Query: 413 ---------------------RFELTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQ 451
                                ++ L+  QA  ILE RL +L  LE  K+  E  E+L + 
Sbjct: 427 RAGADSCRPETLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQI 486

Query: 452 AKLQALLGSEAKLRKLVRSELIKDAETYGDDRRSPIV-ARAEAKALSENELMPTEPVTVV 510
            +L  +L S  +L +++R EL      YGD RR+ I+ AR +   L+  +++P E   V 
Sbjct: 487 GELIRILSSATRLMEVIREELEVIRAEYGDVRRTEILDARLD---LTLGDMIPEEERVVT 543

Query: 511 LSEKGWVRCAK----------GHDIDATGLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSY 560
           +S  G+ +             G    ATG+  K  D         S+   +L  S G+ Y
Sbjct: 544 ISHGGYAKTQPLAAYQAQRRGGKGKSATGV--KDEDYIAHLLVANSHTTLLLFSSKGKVY 601

Query: 561 SLAAHSLPSA--RGQGEPLTGRLTPPPGATFECVLLPDDDAL--YVVASDAGYGFVVKG- 615
            L  + +P A    +G PL   L P     +   +LP ++    + +      G V K  
Sbjct: 602 WLKTYEIPEASRAARGRPLV-NLLPLDSDEYITTMLPVEEYTEGHFIFMATAKGTVKKTP 660

Query: 616 -EDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQDWLAAVTTEGRLLVFKVSDLPQLGKG 674
            E    +   G   L L  G  V+    + D E++ +   +  G++  FK +D+    + 
Sbjct: 661 LESFSRQRSVGLIALELDEG-DVLISAAITDGERE-VMLFSDGGKVTRFKETDV----RA 714

Query: 675 KGNKIIGVPGDRVASREEFVTDLAVIPEGATLVLQAGKRTLSLKADDLEHYKGERGRRG 733
            G    GV G R+   ++ ++ L  IPE  + +L A  R    +    E  + +RG +G
Sbjct: 715 MGRTARGVRGMRLPEGQKLISML--IPEEGSQILTASARGFGKRTAITEFPEYKRGGQG 771



 Score = 28.9 bits (63), Expect = 0.001
 Identities = 21/106 (19%), Positives = 51/106 (48%), Gaps = 6/106 (5%)

Query: 584 PPGATFECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSL---PNGAKVMTP 640
           P G     +L+P++ +  + AS  G+G      +     + G+G++++       +++  
Sbjct: 728 PEGQKLISMLIPEEGSQILTASARGFGKRTAITEFPEYKRGGQGVIAMVSNERNGRLVGA 787

Query: 641 RPVADREQDWLAAVTTEGRLLVFKVSDLPQLGKG-KGNKIIGVPGD 685
             V D E+  +  ++ +G L+  +V ++  LG+  +G  +I +  D
Sbjct: 788 VQVLDGEE--IMLISDQGTLVRTRVDEVSSLGRNTQGVTLIKLASD 831