Pairwise Alignments

Query, 752 a.a., DNA topoisomerase IV subunit A from Pseudomonas putida KT2440

Subject, 856 a.a., DNA gyrase subunit A from Synechococcus elongatus PCC 7942

 Score =  370 bits (949), Expect = e-106
 Identities = 248/684 (36%), Positives = 389/684 (56%), Gaps = 47/684 (6%)

Query: 23  QAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADAKHKKSARTVGDVLGKFH 82
           ++YL Y+M VI+ RALP   DGLKPV RRI+YAM ELGL  D   +K AR VG+VLGK+H
Sbjct: 18  RSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGEVLGKYH 77

Query: 83  PHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTEARLSRY-AEVLL 140
           PHGD+A Y+A+V MAQ FS R  L+DG GN+G+ D DP   AAMRYTE+RL     + LL
Sbjct: 78  PHGDTAVYDALVRMAQDFSMRSPLIDGHGNFGSIDNDPP--AAMRYTESRLKPLTTDGLL 135

Query: 141 SEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIAVGMATDVPPHNLREVASACV 200
            ++   TVD+  NFDG+ QEP VLPARLP +LLNG++GIAVGMAT++PPHN  E+ +  +
Sbjct: 136 QDIEAETVDFSDNFDGSQQEPTVLPARLPQLLLNGSSGIAVGMATNIPPHNPTELIAGVI 195

Query: 201 RLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYESGRGSIRMRAVYRVEDGD-- 258
            L+  P+ +  +L  HI GPD+PT  +++   A I   Y +G+GSI MR V  ++  +  
Sbjct: 196 ALIHNPEISDRELMRHIPGPDFPTGGQVL-GSAGIRDAYLTGKGSITMRGVATIDTIEAP 254

Query: 259 -------IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRIVIIPRSN 311
                  I++T LP+Q + A ++E+IA  +  K+L  ++D+RDESD +    ++ + R  
Sbjct: 255 GRPVRDAIIITELPYQTNKAALIERIAEMVNEKRLEGISDIRDESDRDGMRIVIELKRDA 314

Query: 312 RVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTLLVEWLEFRTNTVRRRLQH 371
              V  ++ +L+  T L+S +  N+  + +DG P L  L+  L  +L+FR  T+ RR ++
Sbjct: 315 YPQV--VLNNLYKQTPLQSNFSANMLAL-VDGEPVLLTLKRSLEVFLDFRIETIERRTRY 371

Query: 372 RLDKVEKRLHLLDGLLTAFLNLDEVIHII-RTEEYP--KQALIERFELTEIQADYILETR 428
            L K E+R HLL GLL A  NLD +I +I R+ + P  KQ LI+ + L+E+Q+D IL+ +
Sbjct: 372 ELRKAEERDHLLQGLLIALGNLDAIIELIRRSADAPRAKQELIDVYGLSEVQSDAILQMQ 431

Query: 429 LRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKDAETYGDDRRSPIV 488
           LR+L  LE  KI  E  +L +     + +L    ++ +++ +EL +  + + + RR+ ++
Sbjct: 432 LRRLTALEAEKIEQEHQDLQRRIEDYRDILARRERVLEIIETELEQLQQRFQEPRRTTLL 491

Query: 489 ARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATGLSYKAGDGFKAAAAGRSNQ 548
             A+ + L   +L+  E   ++L+++G+++    ++  A     +   G K         
Sbjct: 492 -EADGE-LETIDLIANEKSILLLTQQGYIKRMPVNEFTAQSRGTRGKAGAKTKDDDSVEH 549

Query: 549 FAVLID--------STGRSYSLAAHSLPSA--RGQGEPLTGRLTPPPGATFECVLLP--- 595
           F    D          G  Y+L A+ +P+A    +G P+  +L P P       ++P   
Sbjct: 550 FLTCCDHDNILFFSDRGVVYNLPAYRIPAASRNARGVPIV-QLLPIPREERITSIVPVSA 608

Query: 596 -DDDALYVVASDAGYGFVVKGEDLQA-KNKAGKGL--LSLPNGAKVMTPRPVADREQDWL 651
             DD   V+ +  GY   +K   L A  N    GL  ++L  G ++   R    + +D +
Sbjct: 609 FSDDEYLVMLTQGGY---IKKTALSAFANIRSNGLIAIALSEGDQLRWVR--LAKPEDSI 663

Query: 652 AAVTTEGRLLVFKVS--DLPQLGK 673
              + +G  + F+ S  DL  LG+
Sbjct: 664 LIGSRKGMTIHFRASHDDLRPLGR 687