Pairwise Alignments

Query, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

Subject, 833 a.a., ribonuclease R from Pseudomonas stutzeri RCH2

 Score = 1295 bits (3351), Expect = 0.0
 Identities = 655/867 (75%), Positives = 720/867 (83%), Gaps = 44/867 (5%)

Query: 1   MADWQSLDPEAAREAEKYDNPIPSRELILQRLADRGEPAAREELAKEFGLYEEDQIEALR 60
           MADWQSLDPEAAREAEKYDNPIPSRELILQ L +RG PAAREEL +EFGL  E+ IEALR
Sbjct: 1   MADWQSLDPEAAREAEKYDNPIPSRELILQHLGERGSPAAREELVEEFGLVSEEDIEALR 60

Query: 61  RRLRAMERDGQLIYTRRGTYAPVDKLDLICGRVSGHRDGFGFLIPDDGSEDLFLSPSQMR 120
           RRLRAMERDGQLIYTRRGTYAPVDKLDL+CGRVSGHRDGFGFLIPDDGS+DLFLSP+QMR
Sbjct: 61  RRLRAMERDGQLIYTRRGTYAPVDKLDLVCGRVSGHRDGFGFLIPDDGSDDLFLSPAQMR 120

Query: 121 LVFDGDRGLARVSGVDRRGRREGVLVEVISRAHESVVGRYFEEGGIGYVTPDNPKIQQEV 180
           LVFDGDR LARV+G+DRRGRREG +VEVISRAHES+VGRY  E  +G+V PDNPKIQQEV
Sbjct: 121 LVFDGDRCLARVAGLDRRGRREGAIVEVISRAHESIVGRYHIESDVGFVIPDNPKIQQEV 180

Query: 181 LVTAGRNGGAKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALRSYDIPHV 240
           LVT GR   AK GQFVE+KITHWPT RFQPQGD+VEVIGNYMAPGMEIDVALRS+DIPHV
Sbjct: 181 LVTPGRALDAKPGQFVEVKITHWPTQRFQPQGDIVEVIGNYMAPGMEIDVALRSFDIPHV 240

Query: 241 WPNDVVKEARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSG 300
           WP  V+KEA + + EVEEKDK KRVDLRHLPFVTIDGEDARDFDDAVYCE  G  +L +G
Sbjct: 241 WPEAVLKEASRLKPEVEEKDKHKRVDLRHLPFVTIDGEDARDFDDAVYCEKPGGWKLLTG 300

Query: 301 GWRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRL 360
           G+RLYVAIADVS YV++ SALD E+  RGNSVYFPERVVPMLPEELSNGLCSLNP VDRL
Sbjct: 301 GFRLYVAIADVSHYVKVDSALDKESVVRGNSVYFPERVVPMLPEELSNGLCSLNPQVDRL 360

Query: 361 AMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALREEYKEVVPD 420
           AMVCE+T++K+G+M DYQFYE VIHSHARLTYNKVS+MLE  ++ EGK L  EY EV+P 
Sbjct: 361 AMVCEITLSKSGKMTDYQFYEAVIHSHARLTYNKVSAMLEQPKSAEGKRLSAEYAEVLPH 420

Query: 421 LKNLYNLYKVLVEARHTRGAIDFETQETRIIFGEERKIAEIRPTVRNDAHKLIEECMLAA 480
           LK LY+LYKVL++ARHTRGAIDFETQETRI+FG +RKIAEI+PT RNDAHKLIEECML A
Sbjct: 421 LKQLYSLYKVLLKARHTRGAIDFETQETRIVFGSDRKIAEIKPTERNDAHKLIEECMLCA 480

Query: 481 NVATAEFLQKHGVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKD-PSPKDYQALLAS 539
           NVATA FLQKH +PALYRVHD PP ER EKLRAFLGELGLSLHKGK+ P+PKDYQALL  
Sbjct: 481 NVATAAFLQKHEIPALYRVHDAPPLERQEKLRAFLGELGLSLHKGKEGPTPKDYQALLEQ 540

Query: 540 IAGRPDFHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSI 599
           I GRPDFH+IQTVMLRSLSQAVYS EN+GHFGLNYEAY HFTSPIRRYPDLLVHRAIRS+
Sbjct: 541 IQGRPDFHVIQTVMLRSLSQAVYSAENHGHFGLNYEAYAHFTSPIRRYPDLLVHRAIRSV 600

Query: 600 IRSKVDTPHVKRAGAMSIPKARIYPYDENTLEQLGEQCSMTERRADEATRDVVNWLKCEF 659
           IRS+ DTPHV+R GA S+PKARIYPYDE  LEQLGEQCSMTERRADEATRDV NWLKCEF
Sbjct: 601 IRSRRDTPHVRREGATSMPKARIYPYDEAALEQLGEQCSMTERRADEATRDVTNWLKCEF 660

Query: 660 MKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLAGERTGR 719
           MKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHV+A+PGDYYHFDP+HHRL+GER+GR
Sbjct: 661 MKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVTAMPGDYYHFDPLHHRLSGERSGR 720

Query: 720 SFRLGDTIEVKVMRVDLDERKIDFEVSEKTLAAPIGRKQRGAAPVAEKAEQQPATEAKAT 779
           SFRLGD++EV+VMRVDLDERKIDFE+                           A   K+ 
Sbjct: 721 SFRLGDSVEVRVMRVDLDERKIDFELI--------------------------AGGTKSA 754

Query: 780 PKPRSRKSEASEAYFPKDAVQRNAEVRKSREMKKALMTDAR--------SSAGSKSEKG- 830
           P  R  +    E          NA+VRKSRE+KKAL+ +A+         S GSKS  G 
Sbjct: 755 PGQRDGEGRGRE--------PGNADVRKSRELKKALLEEAKGGRKGKGEKSTGSKSRSGS 806

Query: 831 GKPSGKPTKHRKGPPKSGAPRKNKSNS 857
            KP        K    SG PRK K+ S
Sbjct: 807 AKPKSAAKSGDKPSAASGGPRKRKAKS 833