Pairwise Alignments

Query, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

Subject, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

 Score =  175 bits (443), Expect = 9e-48
 Identities = 174/697 (24%), Positives = 298/697 (42%), Gaps = 66/697 (9%)

Query: 91  GRVSGHRDGFGFLIPDDGSEDLFLSPSQMRLVFDGDRGLARVSGVDRRGRREGVLVEVIS 150
           G +     GFGFL   D     F+ P  M+    GD+ +A +   + R   E    E+I 
Sbjct: 24  GTIKASDKGFGFL-EVDSKTSYFVPPPYMKKCMHGDKVVAFIRTENEREVAEPS--ELIE 80

Query: 151 RAHESVVGRYFEEGGIGYVTPDNPKIQQEVLVTAGRNG----GAKIGQFVEIKITHWPTP 206
           ++    +GR     G   V PD+P++++  L    + G      + G +V   +   P  
Sbjct: 81  QSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLNEADFQEGDWVVAHLVRHPLK 140

Query: 207 RFQPQGDVVEVIGNYMAPGMEID---VALRSYDIPHVWPNDVVKEARKFRSEVEEKDKEK 263
                G  V++         +I    V L   D+P+  P  +     K  +++       
Sbjct: 141 G--DDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGIDDWQLKDDADLV------ 192

Query: 264 RVDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSGGWRLYVAIADVSSYVRLGSALDV 323
           R DL  LPFVTIDGE  +D DDA+Y + L      +G + L +AIAD ++Y+     +D 
Sbjct: 193 REDLTALPFVTIDGESTKDMDDALYAQQLP-----NGDFALTIAIADPTAYITPEDEMDK 247

Query: 324 EAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRLAMVCEMTMNKAGQM-VDYQFYEG 382
            A++RG ++Y P R +PMLP +L++ LCSL  +  R A+ C +T+ K G +  D +F+  
Sbjct: 248 VARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDIRFFAA 307

Query: 383 VIHSHARLTYNKVSSMLEHSRTREGKALREEYKEVVPDLKNLYNLYKVLVEARHTRGAID 442
            I SHARL Y+ VS  LE   + + +   EE  +VV D   LY   +     R T   + 
Sbjct: 308 NIKSHARLVYDHVSDWLETGSSEQWQP-SEEIAQVVRD---LYAFSQARANWRETHAVVF 363

Query: 443 FETQETRIIFGEERKIAEIRPTVRNDAHKLIEECMLAANVATAEFLQKHGVPALYRVHDG 502
            +  + R     +  +  I   +R  A++L+EE M+ AN+   + LQ      ++  H G
Sbjct: 364 PDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHAG 423

Query: 503 PPPERLEKLRAFLGELGLSLHKGKDPSPKDYQALLASIAGRPDFHLIQTVMLRSLSQAVY 562
              E++  +   +   G      +  +  +  A L       +   +   + +  S +  
Sbjct: 424 FKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSYSEI 483

Query: 563 STENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSIIRSK--VDTPHVKRAGAMSIPKA 620
             +   HF +  + Y  +TSPIR+Y D++ HR +++ I  K  V TP             
Sbjct: 484 GNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQTPD------------ 531

Query: 621 RIYPYDENTLEQLGEQCSMTERRADEATRDVVNWLKCEFMKDRVGE--TFPGVITAVTGF 678
                     E +GE+ ++  +    A R+V +WL    + D   +   F   I  +   
Sbjct: 532 ----------ETVGEELALHRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRP 581

Query: 679 GLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLAGE------RTGRSFRLGDTIEVKVM 732
           G+ V L +        ++ +PG     +       GE           ++LGD +E+ + 
Sbjct: 582 GMRVRLLENGA-----MAFIPGALILDNKERIECNGEDGTVLIDKEVVYKLGDVLEIVLT 636

Query: 733 RVDLDERKIDFEVSEKTLAAPIGRKQRGAAPVAEKAE 769
            V+ + R +  + ++   A  +   Q  A   AE AE
Sbjct: 637 EVNQENRSLVGKPTQ-VFADLVSETQTSAEQPAEGAE 672