Pairwise Alignments

Query, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

Subject, 465 a.a., putative ribonuclease II from Synechococcus elongatus PCC 7942

 Score = 70.5 bits (171), Expect = 2e-16
 Identities = 84/335 (25%), Positives = 143/335 (42%), Gaps = 62/335 (18%)

Query: 273 VTIDGEDARDFDDAVYCEPLGKLRLFSGGWR--LYVAIADVSSYVRLGSALDVEAQQRGN 330
           +TIDG  + D DD V+ EP+ +      G R  L +AIA V++ +      +  A  R  
Sbjct: 5   LTIDGPSSLDLDDGVWAEPVDEQ-----GDRICLTIAIAGVATALPHLGIEECVALARLQ 59

Query: 331 SVYFPERVV-PMLPEELSNGLCSLNPHVDRLAMVCEMTMNKAGQMVDYQFYEGVIHSHAR 389
           SVY   ++V  ML  E +  L SL P   R  +  +  +++ G+++  +F+E  + S A+
Sbjct: 60  SVYQGTQMVRAMLSPERTEAL-SLLPGGPRPVVCLQALISRRGEVLFSEFWETEVESVAK 118

Query: 390 LTYNKVSSMLEHSRTREGKALREEYKEVVPDLKNLYNLYKVLVEARHTRGAIDFETQETR 449
           L+Y +V+ +L      E                    L +VL       G +D   +  R
Sbjct: 119 LSYEQVNGVLAGKEDHE--------------------LREVLRWLAIAAGRLD---KNRR 155

Query: 450 IIFGEERKIA---EIRPTVRNDAHKLIEECMLAANVATAEFLQKHGVPALYRVHDGPPPE 506
            ++G  R+     ++   +   A +LI    +  N    E L++ G PAL+RV D   P 
Sbjct: 156 GLWGRSRQGEFRDDLGSVITGKAEQLIASTAIFYNQMAGEKLKQSGFPALFRVQD---PR 212

Query: 507 RLEKLRAFLGELGLSLHKGKDPSPKDYQALLASIAGRPDFHLIQTVMLRSLSQAVYSTEN 566
           + E +     E G                      G P   ++  ++   L +A +  + 
Sbjct: 213 QDEAIAPLFEEHG----------------------GNPT--VLAPLISHCLPRAQHRVKA 248

Query: 567 NGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSIIR 601
             H+ L   AY   +SP+RRY DL+  R + +I+R
Sbjct: 249 GLHWALQLPAYARSSSPLRRYEDLVNQRQLLAILR 283