Pairwise Alignments

Query, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

Subject, 670 a.a., Exoribonuclease II from Synechococcus elongatus PCC 7942

 Score =  125 bits (314), Expect = 8e-33
 Identities = 116/430 (26%), Positives = 179/430 (41%), Gaps = 68/430 (15%)

Query: 172 DNPKIQQEVLVTAGRNGGAKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVA 231
           +N +   EVL   GR   A+    + + + +W     QP  ++                 
Sbjct: 194 NNTRAATEVLTALGRQASAQAAHDLLVALGYW-----QPHENLF---------------- 232

Query: 232 LRSYDIPHVWPNDVVKEARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEP 291
           LR   +P  +P  V+   +    +    D+++R DL HL   TID E  R+ DD + C+ 
Sbjct: 233 LRRSQVPTTFPVAVMDVVQTCL-DAPPVDRDRRQDLSHLKVYTIDDESTREIDDGLSCQ- 290

Query: 292 LGKLRLFSGGWRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLC 351
               RL  G  +L+V +AD +  +  G ALD+EA++R  ++Y P  +VPM P EL+ G  
Sbjct: 291 ----RLSDGRLQLWVHVADPTRLIEPGDALDLEARRRSTTIYLPTGMVPMFPLELAAGPM 346

Query: 352 SLNPHVDRLAMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALR 411
           SL       A+   + +++ G +  Y+     I    RLTY  V  ML+   T E     
Sbjct: 347 SLVQGQACCALSFGICLDEQGAIASYEIVPSQIRPTYRLTYEDVDEMLDLGVTAE----- 401

Query: 412 EEYKEVVPDLKNLYNLYKVLVEARHTRGAIDFETQETRIIFGEERKIAEIRPTVRNDAHK 471
                   +L +L+ + +     RH +GAI     E  I   E      I     + A  
Sbjct: 402 -------QELLDLWEMAQRRRRWRHQQGAIAINMPEAVIKVSEADDQISISVLEESAARA 454

Query: 472 LIEECMLAANVATAEFLQKHGVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDPSPK 531
           L+ E M+ A      +   +G+P  +R   G P   L                   PS +
Sbjct: 455 LVAEMMILAGEVAGHYGATNGLPLPFR---GQPQPEL-------------------PSEE 492

Query: 532 DYQALLASIAGRPDFHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLL 591
           +   LLA  AG      I+  M RS +    S     H  L  + Y+  TSPIRRY DL+
Sbjct: 493 E---LLALPAGPVRSCAIRRCMPRSET----SLNPQRHASLGLDRYSQVTSPIRRYTDLV 545

Query: 592 VHRAIRSIIR 601
            H  I++ +R
Sbjct: 546 THFQIKAHLR 555



 Score = 25.8 bits (55), Expect = 0.009
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 18/68 (26%)

Query: 595 AIRSIIRSKVDTPHVKRAGAMSIPKARIYPYDENTLEQLGEQCSMTERRADEATRDVVNW 654
           A+  ++++ +D P V R     +   ++Y  D                  DE+TR++ + 
Sbjct: 245 AVMDVVQTCLDAPPVDRDRRQDLSHLKVYTID------------------DESTREIDDG 286

Query: 655 LKCEFMKD 662
           L C+ + D
Sbjct: 287 LSCQRLSD 294