Pairwise Alignments

Query, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

Subject, 789 a.a., exoribonuclease II protein from Sinorhizobium meliloti 1021

 Score =  401 bits (1030), Expect = e-116
 Identities = 278/782 (35%), Positives = 411/782 (52%), Gaps = 58/782 (7%)

Query: 22  IPSRELILQRLADRGEPAAREELAKEFGLYEEDQIEALRRRLRAMERDGQLIYTRR---- 77
           +PSRE++++ +A+  + A++ E+AK FGL  E ++E L+  LR++E DG +   R+    
Sbjct: 40  VPSREVLMRFIAENPQHASKREIAKAFGLKGEARVE-LKGLLRSLEEDGLVEKKRKSLVR 98

Query: 78  -GTYAPVDKLDLICGRVSGHRDGF-GFLIPDDGSEDLFL--------SPSQMRLVFDGDR 127
            G   PV  LD+    V G   G     + DDG     L        +  +  +   GDR
Sbjct: 99  PGGLPPVTVLDITIRDVDGDLIGRPAEWLDDDGVAPAVLIKQSSVARAKGKTPVGGLGDR 158

Query: 128 GLARVSGVDRRG--RREGVLVEVISRAHESVVGRY-FEEGGIGYVTPDNPKIQQEVLVTA 184
            LA++     RG       +++V+ +  ++V+G +    GG G + P + K  +E+L+  
Sbjct: 159 VLAKIFPAKERGGPAYTARIIKVLDKRKDAVLGVFRATPGGGGRLMPID-KRGEELLIDP 217

Query: 185 GRNGGAKIGQFVEI---KITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALRSYDIPHVW 241
              G AK G  VE    +I  +  PR Q Q     V+G+  +      +A+ ++ IPHV+
Sbjct: 218 EFIGDAKEGDLVEAHLSRIGRYGLPRAQVQN----VVGSVASEKAISMIAIHAHGIPHVF 273

Query: 242 PNDVVKEARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSGG 301
           P  V++EA   R          R D R LP +TID  DA+D DDAVY EP        GG
Sbjct: 274 PERVLQEAEAARPAT----MAHREDWRTLPLITIDPADAKDHDDAVYAEPDSSPDN-PGG 328

Query: 302 WRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRLA 361
             + VAIADVS YVR  SALD+EA +RGNSVYFP+RVVPMLPE +SN LCSL   VDR A
Sbjct: 329 VIVTVAIADVSWYVRARSALDLEALKRGNSVYFPDRVVPMLPERISNDLCSLKEGVDRPA 388

Query: 362 MVCEMTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALREEYKEVVPDL 421
           +   M  +K G+   + F+  ++ S A+L+Y +  + ++ +   +   + +        L
Sbjct: 389 LAVRMRFSKEGRKAGHTFHRIMMRSAAKLSYQQAQTAIDGAPDDKTGPILDTI------L 442

Query: 422 KNLYNLYKVLVEARHTRGAIDFETQETRIIFGEERKIAEIRPTVRNDAHKLIEECMLAAN 481
           K L+  Y+ L   R  R  ++ +  E +II   +  +  +    R DAHKLIEE M+ AN
Sbjct: 443 KPLWEAYRTLTRGRERRQPLELDVPERKIILKPDGTVDRVFVPERLDAHKLIEEMMIQAN 502

Query: 482 VATAEFLQKHGVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDPSPKDYQALLASIA 541
           VA AE L++     +YRVHD P   + E LR FL  L ++L KG +     +  +LA   
Sbjct: 503 VAAAETLEQKRQVLIYRVHDQPSLAKQESLREFLATLDIALAKGGNMRANHFNGILAKAD 562

Query: 542 GRPDFHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSIIR 601
           G+P   ++  ++LRS SQA+YS EN GHFGLN   Y HFTSPIRRY DL+VHRA+ S   
Sbjct: 563 GKPYETIVNQMVLRSQSQAIYSPENIGHFGLNLLRYAHFTSPIRRYADLIVHRALVS--- 619

Query: 602 SKVDTPHVKRAGAMSIPKARIYPYDENTLEQLGEQCSMTERRADEATRDVVNWLKCEFMK 661
                       A+ + +  I P +E  L+ +  + S  ERRA  A RD ++ L    + 
Sbjct: 620 ------------ALGLGEGGIMPEEEAALDDIAAEISTFERRAMAAERDTIDRLIAHHLN 667

Query: 662 DRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLAGERTGRSF 721
            RVGE F G ++ VT  GLFV L     +G + +S L  DY+ +D  H  L+GE++G  +
Sbjct: 668 GRVGEEFDGRVSGVTKAGLFVTLPAYGADGFIPISTLGRDYFIYDEAHQALSGEKSGLGY 727

Query: 722 RLGDTIEVKVMRVDLDERKIDFEVSEKTLAAPIGRKQRGAAPVAEKAEQQPATEAKATPK 781
           RLGD ++VK++        + FE+  +      GRK   A     KA ++  T A+  P 
Sbjct: 728 RLGDPVQVKLVEAVPLAGALRFEMLSE------GRKMPTAMRSFHKAGRRDRTGARKRPG 781

Query: 782 PR 783
            R
Sbjct: 782 TR 783