Pairwise Alignments

Query, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

Subject, 828 a.a., ribonuclease R from Dechlorosoma suillum PS

 Score =  770 bits (1987), Expect = 0.0
 Identities = 416/854 (48%), Positives = 535/854 (62%), Gaps = 55/854 (6%)

Query: 8   DPEAAREAEKYDNPIPSRELILQRLADRGEPAAREELAKEFGLYEEDQIEALRRRLRAME 67
           DP   RE +KY+ P+PSRE  +Q L D+G P + ++L     +   D+ +  +RRL AME
Sbjct: 13  DPFFERECQKYEIPLPSREYTMQLLQDQGRPVSFDQLVALLDI-SRDEEDLFQRRLNAME 71

Query: 68  RDGQLIYTRRGTYAPVDKLDLICGRVSGHRDGFGFLIPDDGSEDLFLSPSQMRLVFDGDR 127
           RDGQL+  R+ +Y   +K DLI G+V GH DGFGF+ PDDGS+DLFL P QM  V  GDR
Sbjct: 72  RDGQLLRNRKNSYILPEKADLIPGKVEGHPDGFGFVKPDDGSDDLFLEPKQMDKVLHGDR 131

Query: 128 GLARVSGVDRRGRREGVLVEVISRAHESVVGRYFEEGGIGYVTPDNPKIQQEVLV--TAG 185
            L R  G+DRRGRRE  +VEV+ RA+  +VGR  EE GI +V  +N +I Q++L+  TA 
Sbjct: 132 VLVRCIGLDRRGRREATIVEVLERANTRLVGRLMEEHGIQFVVAENKRISQDILIPPTAM 191

Query: 186 RNGGAKI----GQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALRSYDIPHVW 241
            +  AK+    G  V ++I   P+   QP G +VE++GNY  PGMEI++ALR +D+P  +
Sbjct: 192 TDKRAKLKARPGNVVMVEILEQPSRYSQPIGRIVEILGNYADPGMEIEIALRKHDLPFEF 251

Query: 242 PNDVVKEARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSGG 301
             +   E +    +V++ D + R DLR LP VTIDGE ARDFDDAV+CE +G+      G
Sbjct: 252 SKEAQAENKAVPDKVKKSDFKGREDLRELPLVTIDGETARDFDDAVFCEKVGR------G 305

Query: 302 WRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRLA 361
           WRL VAIADVS YVR G ALD EA  RGNSVYFP RV+PMLPE+LSNG+CSLNP V+RLA
Sbjct: 306 WRLVVAIADVSHYVRPGMALDQEAYDRGNSVYFPRRVIPMLPEKLSNGICSLNPDVERLA 365

Query: 362 MVCEMTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALREEYKEVVPDL 421
           MVC+M ++  G +  Y+FY  V  SHARLTYN+V   L      E     E ++ + P L
Sbjct: 366 MVCDMNISATGSIGKYRFYPAVFRSHARLTYNQVWGWLSGQSQPEN----EVHQALQPHL 421

Query: 422 KNLYNLYKVLVEARHTRGAIDFETQETRIIFGEERKIAEIRPTVRNDAHKLIEECMLAAN 481
           +NLY L++VL++AR  RGAIDFET ET+++F  + KI  I P VRNDAH+LIEECMLAAN
Sbjct: 422 QNLYKLFQVLLKARKKRGAIDFETVETQMLFNAQGKIENIVPVVRNDAHRLIEECMLAAN 481

Query: 482 VATAEFLQKHGVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDPSPKDYQALLASIA 541
           V  + FL +H    LYRVH GP PE+LE LRAFLGE G SL  G +P  KDY  LL  I 
Sbjct: 482 VCASGFLHEHKQACLYRVHQGPTPEKLENLRAFLGEFGFSLAGGDEPKAKDYAELLEKIQ 541

Query: 542 GRPDFHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSIIR 601
           GRPD  L+QTVMLRSL QA Y+ EN GHFGL YEAYTHFTSPIRRYPDLLVHRAI++++ 
Sbjct: 542 GRPDTQLLQTVMLRSLRQAQYAPENLGHFGLAYEAYTHFTSPIRRYPDLLVHRAIKAVLA 601

Query: 602 SKVDTPHVKRAGAMSIPKARIYPYDENTLEQLGEQCSMTERRADEATRDVVNWLKCEFMK 661
            +                     Y+    E +G  CS TERRADEATRDV NWLKC +MK
Sbjct: 602 GET--------------------YNPGKWEDIGLHCSGTERRADEATRDVDNWLKCFYMK 641

Query: 662 DRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLAGERTGRSF 721
           +R+GE F G I  V  FG+FV L +++VEG+VHVS L  DY+HF+P  H++ GER+G+ F
Sbjct: 642 ERIGEEFEGTIAGVAAFGIFVALDEVFVEGMVHVSELGEDYFHFEPAKHQMLGERSGKRF 701

Query: 722 RLGDTIEVKVMRVDLDERKIDFEVSEKTLAAPIG-------RKQRGAAPVAEKAEQQPAT 774
           RLGD + VK++R DL+  +IDF ++++    P G       RK     P    A  Q   
Sbjct: 702 RLGDRLRVKLVRADLESGRIDFILAQEKKEGPAGDDEVVTWRKNTTGKPALGAAAPQGKP 761

Query: 775 EAKATPKPRSRKSEASEAYFPKDAVQRNAEVRKSREMKKALMTDARSSAGSKSEKGGKPS 834
            A +      + +   +A  P     R                 A++ A  +S KGG   
Sbjct: 762 RAGSGGGKPGKSAPGGKAGGPGQGGHRGKS-----------PAAAKTGAPKRSGKGGAKG 810

Query: 835 GKPTKHRKGPPKSG 848
           G  +  R G    G
Sbjct: 811 GSKSASRGGANNGG 824