Pairwise Alignments

Query, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

Subject, 637 a.a., exoribonuclease R from Dechlorosoma suillum PS

 Score = 45.4 bits (106), Expect = 1e-08
 Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 19/233 (8%)

Query: 274 TIDGEDARDFDDAVYCEPLGKLRLFSGGWRLYVAIADVSSYVRLGSALDVEAQQRGNSVY 333
           +ID     + DDA   E L  +     GWR+ + IA        G ALD  A+ R ++VY
Sbjct: 245 SIDDAATTEIDDAFSLEALPGI-----GWRVGIHIAAPGLGFGPGEALDQIARDRLSTVY 299

Query: 334 FPERVVPMLPEELSNGLCSLNPHVDRLAMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYN 393
            P   + MLP+ +     +L     R A+   +T+N+  ++V ++     +H  A L ++
Sbjct: 300 MPGNKITMLPDAVVEAY-TLAEGKPRPAVSLYLTVNEGLEIVGHESRLERVHVAANLRHH 358

Query: 394 KVSSMLEHSRTREGKALREEYKEVVPDLKNLYNLYKVLVEARH-----TRGAIDFETQ-- 446
           ++  +   +    G     +++    +LK L+ L     E R      T+G  D+     
Sbjct: 359 EIEPLFNEATLAAGLG---DFR-FAQELKLLWQL-ACACEGRRGKPSATQGIFDYNFDVF 413

Query: 447 -ETRIIFGEERKIAEIRPTVRNDAHKLIEECMLAANVATAEFLQKHGVPALYR 498
            +     G   +I        +   KL+ E M+ AN      L +  V  +YR
Sbjct: 414 PDASDPTGAADRIEISARKRGSPLDKLVAELMIVANATWGGLLAEKKVACIYR 466



 Score = 26.6 bits (57), Expect = 0.005
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 569 HFGLNYEAYTHFTSPIRRYPDLLVHRAIRSIIRSKVDTPH 608
           H GL    Y   +SP+RRY DL+    + ++++ +   PH
Sbjct: 482 HEGLGVPQYAWSSSPLRRYVDLVNQWQLITLLQDR--APH 519