Pairwise Alignments

Query, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

Subject, 295 a.a., Branched-chain amino acid ABC-type transport system, permease components from Pseudomonas stutzeri RCH2

 Score =  140 bits (352), Expect = 5e-38
 Identities = 93/296 (31%), Positives = 158/296 (53%), Gaps = 16/296 (5%)

Query: 5   FLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGVE 64
           FL QL+ GL  GS Y ++++G  +++G++ +INFAHG  YMI A+   +   LLA  G+ 
Sbjct: 12  FLGQLLIGLINGSFYAMLSLGLAIIFGMLKIINFAHGAQYMIGAFAGYL---LLATLGIG 68

Query: 65  SFPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQG 124
            +P L+L       ++ G+    IER+A   L N   L  L+   G++L L+   +   G
Sbjct: 69  YWPALILAP-----IIVGLCSAVIERLALSRLYNLDHLYSLLFTFGLALALEGAFRYFYG 123

Query: 125 ARQQ--GVPTLLEGAMRVEVGSGFVQLTYTKIFILVAAFVGMGLLTYVIKYTKLGRMCRA 182
           +  Q   VP  L G   +    GF+ L   + ++++A+ V       +I+ TKLG   RA
Sbjct: 124 SSGQPYAVPKELAGGYNL----GFMFLPKYRAWVVLASLVICIASWLLIEKTKLGAYLRA 179

Query: 183 TQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAFTAA 242
             ++  +    GIN   ++++ + +GA +A LAG+L    Y         +I I  F   
Sbjct: 180 ATENPTLVRTFGINVPLLLTFTYGMGAALAGLAGMLAAPIYQVSPLMGSNLI-IVVFAVV 238

Query: 243 VLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGLLGR 298
           V+GG+GS+ GA++ G +LGI E L + +   +  ++  F ++ ++L+ RP GL+GR
Sbjct: 239 VVGGMGSILGAIITGYMLGILEGL-TKVFYPEASNIVIFVIMAIVLLVRPAGLMGR 293