Pairwise Alignments

Query, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

Subject, 313 a.a., integral membrane protein of the ABC-type Nat permease for neutral amino acids NatD from Synechococcus elongatus PCC 7942

 Score =  185 bits (469), Expect = 1e-51
 Identities = 110/312 (35%), Positives = 174/312 (55%), Gaps = 13/312 (4%)

Query: 5   FLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLA-AISLALLAYFGV 63
           +LQ L+NGL +G VY L A+GYT+V+ I+G+INFAHG V+ + AYL  A+     ++ G+
Sbjct: 3   WLQPLINGLAIGGVYALFALGYTLVFSILGVINFAHGAVFTLGAYLTYALVGGRFSFNGL 62

Query: 64  ES-----FPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRN--STRLAPLISAIGISLILQ 116
            +     F L     LL   ++ G     IE++A++PLR   +  L  LIS++G+++ + 
Sbjct: 63  LANAALPFSLPFALALLLGSLLAGGASLLIEQVAFRPLRRRQADPLLTLISSLGVAVFIV 122

Query: 117 NYAQISQGARQQGVPTLLEGAMRVEVGSGF----VQLTYTKIFILVAAFVGMGLLTYVIK 172
           N  QI  GA     P+ + G +   +  G     +Q+   +I + V A     LLT++I 
Sbjct: 123 NLIQILVGAEIYTFPSNIYGDLPSAINLGSSDRPIQIRTVQIILFVVAIAMFSLLTWLIN 182

Query: 173 YTKLGRMCRATQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGF 232
            T++G   +A  +D   AS+LGI+ DR I   F +  V+  LAG L+  +      Y G 
Sbjct: 183 GTRVGHALKAVAEDATTASLLGIDPDRYIRLTFFLSGVLGGLAGTLVGTSVSITGPYFGI 242

Query: 233 IIGIKAFTAAVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRP 292
             G+K  +  VLGG+G++PG + GG++LG++E+       S Y+D  +F+LL  +L+ RP
Sbjct: 243 AYGLKGLSVMVLGGLGNIPGTIAGGLLLGLAEAWVPPQW-SGYRDAVAFALLFAMLLIRP 301

Query: 293 QGLLGRPLVAKV 304
           QGL  R    KV
Sbjct: 302 QGLFSRARTEKV 313