Pairwise Alignments

Query, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

Subject, 296 a.a., integral membrane protein of the ABC-type Nat permease for neutral amino acids NatD from Synechococcus elongatus PCC 7942

 Score =  138 bits (348), Expect = 1e-37
 Identities = 96/301 (31%), Positives = 160/301 (53%), Gaps = 30/301 (9%)

Query: 7   QQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAY--LAAISLALLAYFGVE 64
           Q  +NGL  GS+  L A G T++YGI+ + NFA GE   + AY  L A SL L  +  + 
Sbjct: 17  QLAINGLATGSLLALAATGLTLIYGILRLTNFAQGEFLTLGAYFTLVANSLGLSLWLAI- 75

Query: 65  SFPLLMLGTLLFTIVVTGVYGFTIERIAYKPLR----NSTRLAPLISAIGISLILQNYAQ 120
             PL  + T+   ++         E + ++PLR    N+T L  +I  IG+SL L+N   
Sbjct: 76  --PLGAIATIALCLLG--------EAVLWEPLRRQRVNTTTL--IILTIGLSLFLRNLVI 123

Query: 121 ISQGARQQGVPTLLEGAMRVEVGSGFVQLTYTKIFILVAAFVGMGLLTYVIKYTKLGRMC 180
           +  GA  Q     ++ A+ +      +++T   + +++ A   + LL +V++ T +G+  
Sbjct: 124 LIWGAGNQAYRLAVQPALTL----WGLRITLNSLLVVIGAAAALVLLHWVLQRTSIGKGM 179

Query: 181 RATQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYA---GFIIGIK 237
           RA   D  +A + G+  + VI + +VI   + A+AG L    YG         G+ + + 
Sbjct: 180 RAIADDPDLARVSGVPVETVIRWTWVIAGGLTAIAGGL----YGLITAVRPTMGWNLILP 235

Query: 238 AFTAAVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGLLG 297
            F +A+LGGIGS  GA+ GG+ILG ++ L +  + ++YK   +F +L+ +L+ RPQGL  
Sbjct: 236 LFASAILGGIGSPYGAIAGGLILGFAQELSTYWLPAEYKLAVAFVILIGVLVIRPQGLFA 295

Query: 298 R 298
           R
Sbjct: 296 R 296