Pairwise Alignments

Query, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

Subject, 296 a.a., high-affinity branched-chain amino acid ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  141 bits (356), Expect = 2e-38
 Identities = 86/298 (28%), Positives = 163/298 (54%), Gaps = 16/298 (5%)

Query: 6   LQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGVES 65
           +Q +++ L+LG  Y L+A+G  ++YGI+ ++NFA+GE+ M++ Y   ++           
Sbjct: 5   IQFVIDVLSLGGAYALMALGLVIIYGILRLVNFAYGELIMVAGYTMFLASG-------SG 57

Query: 66  FPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQGA 125
            P +++  L   + +  ++G   +  A++P+R  +  A LI++   S +LQN A +    
Sbjct: 58  LPWIVMAVLAVGMAI--LFGIITDYAAFRPVRAKSVTAVLITSFAFSNLLQNAALLFISP 115

Query: 126 RQQGVPTLLEGAMRVEVGSGFVQLTYTKIFILVAAFVG-MGLLTYVIKYTKLGRMCRATQ 184
           R + VP     +  V +G     +T  +  I +AA +  +  + ++++ T LG   RA  
Sbjct: 116 RPRNVPLPDIFSQTVSIGGA---ITPVRNLITIAASIALLAGVAFLMRRTTLGIAMRAAA 172

Query: 185 QDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAFTAAVL 244
            +  MA +LG+  + +IS  F +   +A + G+L     GT     G    + AF A V+
Sbjct: 173 TNFTMARMLGVPANLIISSAFALSGFLAGVVGILWIGRIGTVVPGIGLEPLLVAFIATVI 232

Query: 245 GGIGSLPGAMLGGIILGISESLFSGLINSD---YKDVFSFSLLVMILIFRPQGLLGRP 299
           GG+ SLPGA++GG +L + ++  +  ++ D   ++D F+FSL+++IL++RP GL+  P
Sbjct: 233 GGMRSLPGAVVGGFLLALIDTTLNYTLSQDLLKFRDAFTFSLVILILLWRPDGLIRGP 290