Pairwise Alignments

Query, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

Subject, 316 a.a., branched-chain amino acid ABC transporter permease from Klebsiella michiganensis M5al

 Score =  240 bits (613), Expect = 3e-68
 Identities = 136/306 (44%), Positives = 197/306 (64%), Gaps = 15/306 (4%)

Query: 6   LQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISL-ALLAYFGVE 64
           +QQ++NG+ LGS+Y LIA+GYTMVYGI+ +INFAHG++ M+ A      + AL A+F   
Sbjct: 5   IQQIINGVMLGSIYALIALGYTMVYGILRIINFAHGDILMVGALTTLSGMHALNAHFPTL 64

Query: 65  SFPLLMLG-TLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQ 123
             PL  LG  LL  + V  +    +ER AY+ LRN+ RLAPLIS IG+S++LQ  A I  
Sbjct: 65  P-PLAQLGLALLLAMTVCALLAMAVERFAYRRLRNAPRLAPLISGIGVSVLLQTVAMIVW 123

Query: 124 GARQQGVPTLLE-GAMRVEVGSGF---VQLTYTKIFILVAAFVGMGLLTYVIKYTKLGRM 179
                  P +L    + V  GS       +T T I  +  A   M  L  +++YT+LGR 
Sbjct: 124 SRNPLMFPQILPMDPIAVTHGSAAHPPALITVTGIVTVALALTVMLGLWLLVEYTRLGRG 183

Query: 180 CRATQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAF 239
            RA  ++ ++A+++G+N + +I+  F IG V AALAGV++  NYG+  F  GF+ GIKAF
Sbjct: 184 MRAVAENPRIATLMGVNPNAIIALTFAIGGVFAALAGVMMASNYGSAGFSMGFLPGIKAF 243

Query: 240 TAAVLGGIGSLPGAMLGGIILGISESLFS--------GLINSDYKDVFSFSLLVMILIFR 291
           TAAVLGGIG++ GAM+GG++LG+ ESL +        G+  S+Y+D+F+F +L+++L+FR
Sbjct: 244 TAAVLGGIGNIRGAMIGGLLLGLIESLGAGYLGDLTHGVFGSNYQDIFAFMVLILVLVFR 303

Query: 292 PQGLLG 297
           P GLLG
Sbjct: 304 PAGLLG 309