Pairwise Alignments

Query, 435 a.a., High-affinity branched-chain amino acid transport system permease protein BraE from Pseudomonas putida KT2440

Subject, 295 a.a., inner-membrane translocator (NCBI) from Rhodospirillum rubrum S1H

 Score =  140 bits (352), Expect = 7e-38
 Identities = 100/312 (32%), Positives = 157/312 (50%), Gaps = 43/312 (13%)

Query: 126 YLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLGLGFWSVLP 185
           YLL V ++ LIY L+ LGLN+  G  GL++ G V F+AIGAY  AL    L +  W +L 
Sbjct: 4   YLLAVTVIALIYSLMTLGLNLQYGFTGLINFGVVGFFAIGAYTSAL----LVVAGWPIL- 58

Query: 186 LAAIAAALAGCILGFPV----LRMHGDYLAIVTLGFGEIIRLVLNNWLSFTGGPNGMPAP 241
           LA   A  A  ++ +PV    LR+  +Y AIV LGF E IRLV+ +    TGG  G+   
Sbjct: 59  LALPCAVAASALVSWPVALLSLRLRIEYFAIVMLGFAETIRLVVTSEGWLTGGVQGVT-- 116

Query: 242 SPTFFGLEFGRRAKDGGVPIHEFFGFEYNASLKFVFIYAVLFM-VVLAVLYIKHRLTRMP 300
                           G+P           S++   + A++ +  V+ V+++  RL   P
Sbjct: 117 ----------------GIPS---LAAALGLSMESTLLTALVALGAVIGVVWLSRRLVASP 157

Query: 301 VGRAWEALREDEIACRSMGLNHVLVKLSAFTLGASTAGLAGVFFATYQGFVNPSSFTFFE 360
            GR   A+R+DE A +++G      K++ F LG+++AGLAG  +A Y  +++P  F    
Sbjct: 158 FGRIIRAIRDDEDAVQALGKAPGRFKVAVFVLGSASAGLAGALYAHYITYISPDQFMSLL 217

Query: 361 SALILAIVVLGGMGSTVGVVIAAFVLTVAPELLR------------SFSEYRVLLFGVLM 408
           +  I   ++LGG+G   G V+   VL    E  R              +  R+ + G+ +
Sbjct: 218 TFYIWVAMILGGVGRVGGAVLGTAVLIGLMEGSRFLRDILPGVAEVEMASIRLGVIGLAL 277

Query: 409 VLMMIWRPRGLI 420
           +++M +RP GL+
Sbjct: 278 MVLMRFRPEGLL 289



 Score = 26.6 bits (57), Expect = 0.001
 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 27/130 (20%)

Query: 31  LLALIVFGPVVGVVLDGYTFNAEPRRVAWLVGGVMVGRFLLSL--------FLQTAPGQR 82
           L AL+  G V+GVV       A P            GR + ++         L  APG+ 
Sbjct: 134 LTALVALGAVIGVVWLSRRLVASP-----------FGRIIRAIRDDEDAVQALGKAPGRF 182

Query: 83  MLLGFDSGGSGVHVTAPDYKSRLRYIIPALIVIAIVFPIFANKYLLTVVILGLIYVLLG- 141
            +  F  G +   +    Y   + YI P   +  + F      Y+   +ILG +  + G 
Sbjct: 183 KVAVFVLGSASAGLAGALYAHYITYISPDQFMSLLTF------YIWVAMILGGVGRVGGA 236

Query: 142 -LGLNIVVGL 150
            LG  +++GL
Sbjct: 237 VLGTAVLIGL 246