Pairwise Alignments

Query, 319 a.a., Curved DNA-binding protein from Pseudomonas putida KT2440

Subject, 333 a.a., chaperone DnaJ (NCBI) from Rhodospirillum rubrum S1H

 Score =  163 bits (413), Expect = 5e-45
 Identities = 109/323 (33%), Positives = 163/323 (50%), Gaps = 26/323 (8%)

Query: 4   KDYYKILGVEPTADEKAIKAAYRKLARKYHPDVSK-ERDAEEKFKEANEAYEVLGDAQKR 62
           KD Y+ILGV   A    I+ AYRKLA+  HPD+   +  A   F+E   A+++LGD+ KR
Sbjct: 3   KDPYRILGVGKDATADDIRKAYRKLAKASHPDLHPGDPQAAATFRELAAAHDILGDSAKR 62

Query: 63  AEFD--EIRKYGGQHG--RPFQAPPGWESRGGGGGFEGGDFSDFFSSIFGGRSAG----- 113
           A FD  EI   G +    RP  AP G  S G    +   D++D  ++   G +AG     
Sbjct: 63  ARFDRGEIDASGAERAPERPSSAPGGPGS-GASSRYYYRDYADAGATGGYGTTAGFEDFE 121

Query: 114 --GNPFGGARQQQRSAGRRGQDVELELAVFLEETLSKESKQISFQVPQTNAMGQRTGFTT 171
              + F     + R   R G+D+   L +   +  +   K+++                 
Sbjct: 122 DLSDLFSAGLGRGRKGPRPGRDLRFHLTLDFLDAANGLRKRVTLP-------------DG 168

Query: 172 KTLNVRIPAGVTDGERIRLKGQGAPGSGGGANGDLFLTIRMAPHPLFDVEGHDLIITVPL 231
             L++ IP G  DGE +RLKG+GAPG  GG  GD  + I + PHP F  +G D++I VP+
Sbjct: 169 PVLDLTIPPGTRDGEILRLKGKGAPGLNGGEAGDGLVEISVPPHPAFQRDGDDIVIEVPI 228

Query: 232 APWEAALGAKVAVPTLDGKINLTIRPDSQSGQRLRVPGKGLANKQGERGNLYAQLKVVMP 291
              EA LG K+ VPT+ GK+ +T+ P + SG  LR+ GKG+       G+    LK+ +P
Sbjct: 229 TLDEAVLGGKIEVPTISGKVAMTLPPGTTSGDVLRLRGKGIHPANRPAGDQRVILKIALP 288

Query: 292 PASDESARELWTKLSEKAAFNPR 314
           PA D +     ++  +   ++PR
Sbjct: 289 PAIDGALANFLSQWRKDHPYDPR 311