Pairwise Alignments

Query, 688 a.a., Outer membrane copper receptor OprC from Pseudomonas putida KT2440

Subject, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

 Score = 76.6 bits (187), Expect = 4e-18
 Identities = 156/732 (21%), Positives = 267/732 (36%), Gaps = 104/732 (14%)

Query: 29  LAAGPGHEDHVHDAPELSPTVITAVAPSSPLTVVTNPK-----DPRQPVPASDGADYLKT 83
           LAAG  H +   +       V+TA     PL+ V         +  +    ++  D L  
Sbjct: 14  LAAGFAHAET--EPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELYDALNQ 71

Query: 84  IPGFSAIRAGGTNGDPVLRGMFGSRLNILTNGGLML---GACPNRMDAPTSYISPETYDR 140
            PG S     G   +  +RGM G+R+ I+ +G       GA         +  S     +
Sbjct: 72  EPGVSVTGGAGRPQNITIRGMTGNRIAIVRDGIQSADGYGAADINDKYGRNTFSLSNVKQ 131

Query: 141 LTVIKGPQSVIWGPGGSAGTILFE-REPEKFGTLGSR---VNASLL-AGSNGRFDKVLDA 195
           + V+KG  S ++G G   G ++ E + PE +  L  R   V+A+L  +G + R+      
Sbjct: 132 IQVVKGASSTLYGSGAIGGVVIIESKAPEDY--LYHRDYYVDAALTYSGISNRYQGNHAL 189

Query: 196 AAGNSQGYARFVGNQSRSDDYHDGNKDTVPSRWEKWN-GDVALGWTPDQDTLLELTAGKG 254
           A  +  G A    +  + ++  + N+D      + +N G     W  D   L        
Sbjct: 190 AMRHGDGEALLTIDYWQGEETRNFNQDLYNREVDGYNLGFSHHYWLNDALRLKTHLEYFD 249

Query: 255 DGEARYAGRGM---------------DGSQFKRESLGLRFEKSNLGEVLDKVEAQVYYNY 299
           D   R  G                    SQ +  S+G  +  +NL   +D +E + Y+  
Sbjct: 250 DYAKRREGTSSIQKDDKWDLVSFYEYQRSQTRLASVGADYT-ANLSW-MDTLEGKFYWRS 307

Query: 300 ADHVMDNYSLRTP--SGSGMMGMPMV---SNVDRRTMGARIKATWRWADVQLISGIDAQT 354
            +++     L     SG+G++           +   +GA + A   W   + +       
Sbjct: 308 TENITQTNRLMANDRSGAGILSYRRELRDEGFNDEALGATLNAQKEWQQGEWL------- 360

Query: 355 NEHRQRGGMGVDAH-------------KGKAWTKDADFHNYGAFSELTWYVSGEDRLITG 401
             H+   GM VD H              G     D  F       E  + V G+D L+ G
Sbjct: 361 --HQFAYGMSVDGHDYQRPKSIRRMESSGDDLQADEPF---APAREYRFGVYGQDNLLLG 415

Query: 402 ARLDRASAR-DFRTTSATEGDT----------RADTLPSGFIRYEHDLAAIPATTYIGLG 450
                A  R D +  S    D            ++  PS  I Y+         TY+   
Sbjct: 416 DWTLAAGLRFDAQKLSPKNTDRIHGYKVVTMGSSEWSPSASISYQWHPEW---NTYLSYN 472

Query: 451 HAQRFPDYWELFSPK---LAP--PGAANAFDGIKPEKTTQLDFGIQYRTERLEAWASGYV 505
           H  R P Y + +        P  P      + ++ E +   + G +Y   + + + + + 
Sbjct: 473 HGFRAPSYDKAYGASDHSFVPLTPFIIKPNNKLRAETSDSFELGSKYDNGQTQFYVAVFY 532

Query: 506 GQIRDYIL-----FDYRTGMMGMSTSQAQNI-DARIMGGELGAAYQLTDNWKADATLAYA 559
               ++I      +D  TG +     Q QNI   +  G E+   ++L D W  +  L Y 
Sbjct: 533 SIFDNFIDVKQVGYDNATGSV---IQQYQNIAGVKTYGAEMSVMHRLDDRWSVENKLGYV 589

Query: 560 WGKNSSDGKALPQMPPLESRLGLTYSRDVWSVGALWRLVAAQNRI---AENQGNVVGKDY 616
            GK+  + + +  + PLE  + L Y R+ W   +     +A +R+      QG     + 
Sbjct: 590 DGKD-GENQYVRTLTPLEGSVQLNYQRERWDAYSRLNWASAMSRVPTCTTEQGKET--EC 646

Query: 617 DKSAGFGVFSLNGAYKVNNNLKLSAGVDNLFDKTYAEHLNLAGNAGFGYPATDPQPVNEP 676
             + G+  + +   Y+ N  L  S  V NL D+ Y  + ++A     G   +D     EP
Sbjct: 647 ATTTGWVSWDIGLNYQWNAQLSASFNVVNLLDREYTRYQDVA-----GVTPSDTLYSTEP 701

Query: 677 GRTFWTKVDFSF 688
           GR F     + F
Sbjct: 702 GRYFTVHAKYVF 713