Pairwise Alignments

Query, 923 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 858 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  264 bits (675), Expect = 2e-74
 Identities = 186/548 (33%), Positives = 280/548 (51%), Gaps = 31/548 (5%)

Query: 370 VSERLRRISEERFSASRALAASDAEINAKAEFLAKISHEIRTPMNGVLGMTELLLGTPLS 429
           V+ER    SE R +  +A AA+     AK+EFLA +SHEIRTP  G+LG+ +LLL TPL+
Sbjct: 330 VTERKAAESELRHAREKAEAAN----RAKSEFLANMSHEIRTPFTGILGVLDLLLHTPLN 385

Query: 430 VKQRDYVQTIHSAGNELLTLINEILDISKLESRQIELDDVQFDLNALIEDCLNIFRAKAE 489
            KQ  Y++  + +  +LL ++N+ILDISK+E+ ++ +   + DL  L+ +   +  A A 
Sbjct: 386 EKQERYIRLAYGSTKQLLAILNDILDISKIEAGKLVIHPEEVDLVLLLGELTEVQAAAAA 445

Query: 490 QQNIELISFTQPQVPRVISGDPTRLRQALSSLLENALKNTDQGEILLVVALDQRGE-VPR 548
           Q+ +E     +  +P  I GDP RLRQ +++LL NA+K T+ G + L +   +       
Sbjct: 446 QKGLEFRYHIKGIIPPKIHGDPVRLRQIMANLLNNAIKFTNSGWVELDIECTRIAPGRQH 505

Query: 549 LRIAVQDSGEPLPAADREALLQAELHSHHFLSSNKLGGHLGLVIAKQLIGLMQGEFGIKS 608
           LR+ V+DSG  +P   +E +      +    +    G  LGL I KQL+ LM G  G+ S
Sbjct: 506 LRVEVRDSGIGVPPELQETIFDKFTQADSSTTRLFGGTGLGLTICKQLVELMHGSIGVSS 565

Query: 609 STGMGNTLWLTLPL---DPSRLEQPPADLDSPL----RDARVLVVDDNDTCRKVLVQQCS 661
           ++G G+  W  + L   DP+    P     SP+    RD R+L+VDD +  R+VL +  +
Sbjct: 566 NSGEGSCFWFDIELPESDPTVSPVPVLPAGSPITALPRDTRILLVDDTEANREVLAEYLA 625

Query: 662 AWGMNVSAVPSGKEALALLRTKAHLRDYFDAVLLDQNMPGMTGMQLAAKIKEDPSLNHDI 721
                V    +G EA+ L  +        DA+L+D  M GM G +   +I+         
Sbjct: 626 QAHCQVRQAANGLEAVTLAESWQP-----DAILMDCQMAGMDGYEATRQIRIQEGQRRRT 680

Query: 722 LVVMLTGISNAPSKVIARNAGVKRILAKPVAGYTLKTTLAEELAQRGREQAMPASLPGIP 781
            ++ LT       +     AG+   L KPV   TL  T+ + L   GRE   PA  P   
Sbjct: 681 PIIALTAFVMRGDREKCLAAGMDDYLPKPVDAQTLIATIGKWL--EGRE-TNPARTPRF- 736

Query: 782 QALDLPGDFRVLVAEDNSISTKVIRSMLGKLNLKPDTACNGEEALQAMKAQHYDLVLMDC 841
                    R+L+ +DN    +    +L  L  +  +A +GEEALQ      +DLVLMDC
Sbjct: 737 -------SGRILLVDDNPEIREASTCLLEALGCQVQSASSGEEALQLGPEADFDLVLMDC 789

Query: 842 EMPILDGFSATQQLRAWEAENQRQRTPVVALTAHILAEHKERARLAGMDGHMAKPVELSQ 901
            MP LDG + T   RAW A  +   T ++ALTA    E + + R AGM+  +AKP    +
Sbjct: 790 RMPGLDGCATT---RAWRARERGTPTAIIALTAGDPDESRAQCREAGMNDFLAKPFSEQE 846

Query: 902 LRELIQYW 909
           L  L++ W
Sbjct: 847 LVTLLRRW 854



 Score = 95.5 bits (236), Expect = 1e-23
 Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 4/146 (2%)

Query: 777 LPGIPQALDLPGDFRVLVAEDNSISTKVIRSMLGKLNLKPDTACNGEEALQAMKAQHYDL 836
           LP       LP D R+L+ +D   + +V+   L + + +   A NG EA+   ++   D 
Sbjct: 592 LPAGSPITALPRDTRILLVDDTEANREVLAEYLAQAHCQVRQAANGLEAVTLAESWQPDA 651

Query: 837 VLMDCEMPILDGFSATQQLRAWEAENQRQRTPVVALTAHILAEHKERARLAGMDGHMAKP 896
           +LMDC+M  +DG+ AT+Q+R    E QR+RTP++ALTA ++   +E+   AGMD ++ KP
Sbjct: 652 ILMDCQMAGMDGYEATRQIRI--QEGQRRRTPIIALTAFVMRGDREKCLAAGMDDYLPKP 709

Query: 897 VELSQLRELIQYWANHREAKVDPAHT 922
           V+   L   I  W   RE   +PA T
Sbjct: 710 VDAQTLIATIGKWLEGRE--TNPART 733



 Score = 51.2 bits (121), Expect = 3e-10
 Identities = 43/134 (32%), Positives = 59/134 (44%), Gaps = 14/134 (10%)

Query: 636 SPLRDARVLVVDDNDTCRKVLVQQCSAWGMNVSAVPSGKEALALLRTKAHLRDYFDAVLL 695
           +P    R+L+VDDN   R+       A G  V +  SG+EAL L          FD VL+
Sbjct: 733 TPRFSGRILLVDDNPEIREASTCLLEALGCQVQSASSGEEALQLGPEAD-----FDLVLM 787

Query: 696 DQNMPGMTGMQLA----AKIKEDPSLNHDILVVMLTGISNAPSKVIARNAGVKRILAKPV 751
           D  MPG+ G        A+ +  P+      ++ LT      S+   R AG+   LAKP 
Sbjct: 788 DCRMPGLDGCATTRAWRARERGTPTA-----IIALTAGDPDESRAQCREAGMNDFLAKPF 842

Query: 752 AGYTLKTTLAEELA 765
           +   L T L   LA
Sbjct: 843 SEQELVTLLRRWLA 856