Pairwise Alignments

Query, 923 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 1279 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  297 bits (761), Expect = 3e-84
 Identities = 192/545 (35%), Positives = 295/545 (54%), Gaps = 23/545 (4%)

Query: 377  ISEER---FSASRALAASDAEINAKAEFLAKISHEIRTPMNGVLGMTELLLGTPLSVKQR 433
            I EER      ++A A ++A   AKA+FLA +SHEIRTPMN V+GMT L L T L  +QR
Sbjct: 512  IGEERRILAEMAQAKALAEAAAQAKADFLANMSHEIRTPMNAVIGMTHLALKTDLDERQR 571

Query: 434  DYVQTIHSAGNELLTLINEILDISKLESRQIELDDVQFDLNALIEDCLNIFRAKAEQQNI 493
            +Y++ I  +   LL +IN+ILD SK E+ ++ ++ + FDL  ++ED  ++   +A  + +
Sbjct: 572  EYLRKIQHSSQHLLGIINDILDFSKSEAGKLHIEQIDFDLEKVLEDVSSLMSERATSKGL 631

Query: 494  ELISFTQPQVPRVISGDPTRLRQALSSLLENALKNTDQGEILLVVALDQ-RGEVPRLRIA 552
            E +     +VPR + GDP R+ Q L +   NA+K T++GE+ + V L++ +G+   LR A
Sbjct: 632  EFVIEMADEVPRHLVGDPLRIGQVLINYASNAVKFTERGEVAIHVGLEEDQGQEVLLRFA 691

Query: 553  VQDSGEPLPAADREALLQAELHSHHFLSSNKLGGHLGLVIAKQLIGLMQGEFGIKSSTGM 612
            V D+G  + A +   L  +   +    +    G  LGLVIAK+L  LM G+ G +S  G 
Sbjct: 692  VHDTGIGIKAGELPTLFNSFQQADSSTTRKYGGTGLGLVIAKRLAELMGGQVGAESEPGR 751

Query: 613  GNTLWLTLPLDPSRLEQPPADLDSPLRDARVLVVDDNDTCRKVLVQQCSAWGMNVSAVPS 672
            G+T W T  L  S   +  A     LR  R+LVVDD+D  R V+     +    VS   S
Sbjct: 752  GSTFWFTARLGRSSNARHRAPPRPDLRTRRLLVVDDHDHARDVVCDMLRSMSFQVSDTDS 811

Query: 673  GKEALALLRTKAHLRDYFDAVLLDQNMPGMTGMQLAAKIKEDPSLNHDILVVMLTGISNA 732
            G   LA L+  +   + +D V LD  MP M G+  A +I+    L    LV+M+T     
Sbjct: 812  GNRCLAELQRASAAGEPYDIVFLDWQMPEMDGLATAREIRR-LELPQPPLVLMITAYGR- 869

Query: 733  PSKVIARNA------GVKRILAKPVAGYTLKTTLAEELAQRG--REQAMPASLPGIPQAL 784
                +AR+A      G++ IL KPV+   L  T+   L         A P +LP +    
Sbjct: 870  --DELARSAGESGLQGIEEILIKPVSPSQLFNTVMRILDHEDGPHSAADPEALPDLAPLA 927

Query: 785  DLPGDFRVLVAEDNSISTKVIRSMLGKLNLKPDTACNGEEALQAMKAQHYDLVLMDCEMP 844
             L    RVL+ EDN ++ +V    L   N+  D A +G  AL+ ++ Q YD++LMD +MP
Sbjct: 928  GL----RVLLVEDNQLNQEVASEFLAGANMVVDVADDGASALEKVRQQRYDVILMDMQMP 983

Query: 845  ILDGFSATQQLRAWEAENQRQRTPVVALTAHILAEHKERARLAGMDGHMAKPVELSQLRE 904
            ++DG +AT+++R    +      P++A+TA+ + + +ER   AGM+ H+AKPV+   L  
Sbjct: 984  VMDGIAATREIR---RQFPAAVLPILAMTANAMEQDRERCLAAGMNDHIAKPVDPRDLLG 1040

Query: 905  LIQYW 909
             +  W
Sbjct: 1041 KLLKW 1045



 Score = 48.5 bits (114), Expect = 3e-09
 Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 5/129 (3%)

Query: 791 RVLVAEDNSISTKVIRSMLGKLNLKPDTACNGEEALQAMK-----AQHYDLVLMDCEMPI 845
           R+LV +D+  +  V+  ML  ++ +     +G   L  ++      + YD+V +D +MP 
Sbjct: 781 RLLVVDDHDHARDVVCDMLRSMSFQVSDTDSGNRCLAELQRASAAGEPYDIVFLDWQMPE 840

Query: 846 LDGFSATQQLRAWEAENQRQRTPVVALTAHILAEHKERARLAGMDGHMAKPVELSQLREL 905
           +DG +  +++R  E         + A     LA     + L G++  + KPV  SQL   
Sbjct: 841 MDGLATAREIRRLELPQPPLVLMITAYGRDELARSAGESGLQGIEEILIKPVSPSQLFNT 900

Query: 906 IQYWANHRE 914
           +    +H +
Sbjct: 901 VMRILDHED 909