Pairwise Alignments

Query, 923 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  291 bits (746), Expect = 2e-82
 Identities = 185/523 (35%), Positives = 299/523 (57%), Gaps = 20/523 (3%)

Query: 391  SDAEINAKAEFLAKISHEIRTPMNGVLGMTELLLGTPLSVKQRDYVQTIHSAGNELLTLI 450
            +DA   AK +FLA +SHEIRTPMN ++GM++L L T L  KQ++Y++ I  A   LL++I
Sbjct: 1033 ADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTQLDKKQKNYLEKIERASQSLLSII 1092

Query: 451  NEILDISKLESRQIELDDVQFDLNALIEDCLNIFRAKAEQQNIELISFTQPQVPRVISGD 510
            N+ILD SK+E+ ++++++V F L+ ++ED  ++F  +A Q+ IEL+    P VPR + GD
Sbjct: 1093 NDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQKQIELLFAVAPNVPRHLLGD 1152

Query: 511  PTRLRQALSSLLENALKNTDQGEILLVVAL-DQRGEVPRLRIAVQDSGEPLPAADREALL 569
            P RL Q L +L+ NA+K T++GE+LL ++L +Q+ +   LR +V+DSG  L    +  L 
Sbjct: 1153 PLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQNDDVVLRFSVRDSGIGLTQEQQSKLF 1212

Query: 570  QAELHSHHFLSSNKLGGHLGLVIAKQLIGLMQGEFGIKSSTGMGNTLWLTLPLDPSRLEQ 629
            ++   +    +    G  LGL I+KQL+ LM G  G++S  G G+T + T+ L  S  ++
Sbjct: 1213 KSFTQADTSTTRKYGGTGLGLAISKQLVELMGGSIGVESQLGHGSTFFFTVKLCISSGQK 1272

Query: 630  PPADLDSPLRDARVLVVDDNDTCRKVLVQQCSAWGMNVSAVPSGKEALALLRTKAHLRDY 689
                +   L    +LV DDN T R ++     + G NV  V SG EA+     +   ++Y
Sbjct: 1273 --LFVGQELDGMSILVADDNATARDIMRTTLESMGFNVDTVRSGDEAI----MRCSQQEY 1326

Query: 690  FDAVLLDQNMPGMTGMQLAAKIKEDPSLNHDILVVMLTGISNAPSKVIARNAGVKRILAK 749
              A L+D  MP + G++ A +IK+       IL  M++  +N          G+   ++K
Sbjct: 1327 AVA-LIDWKMPNLDGIETAKQIKQQTKNAPRIL--MVSAHANQDFLTQIEQLGLAGYISK 1383

Query: 750  PVAGYTLKTTLAEELAQRGREQAMPA--SLPGIPQALDLP-GDFRVLVAEDNSISTKVIR 806
            P++   L   +   L   GR   +P       I   L LP    R+L+ EDN ++ +V  
Sbjct: 1384 PISASRLLDGIMNAL---GRSGILPVRRHQDNIAPELLLPLKGKRILLVEDNEMNLEVAT 1440

Query: 807  SMLGKLNLKPDTACNGEEALQAMKAQHYDLVLMDCEMPILDGFSATQQLRAWEAENQRQR 866
              L ++ +    A NG+ AL  +  Q +DLVLMDC+MP++DG+ AT+ +R      +  +
Sbjct: 1441 EFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGYQATKAIR---QRPELAQ 1497

Query: 867  TPVVALTAHILAEHKERARLAGMDGHMAKPVELSQL-RELIQY 908
             PV+A+TA+ +A  KE    AGM+ H+AKP+E++ L + L++Y
Sbjct: 1498 LPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKY 1540



 Score = 55.1 bits (131), Expect = 4e-11
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 637  PLRDARVLVVDDNDTCRKVLVQQCSAWGMNVSAVPSGKEALALLRTKAHLRDYFDAVLLD 696
            PL+  R+L+V+DN+   +V  +     G+ +S   +G+ AL  L  ++     FD VL+D
Sbjct: 1420 PLKGKRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQS-----FDLVLMD 1474

Query: 697  QNMPGMTGMQLAAKIKEDPSLNHDILVVMLTGISNAPSKVIARNAGVKRILAKPVAGYTL 756
              MP M G Q    I++ P L   + V+ +T  + A  K +   AG+   +AKP+    L
Sbjct: 1475 CQMPVMDGYQATKAIRQRPELAQ-LPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLL 1533

Query: 757  KTTLAEEL 764
              TL + L
Sbjct: 1534 YQTLLKYL 1541