Pairwise Alignments

Query, 842 a.a., ATP-dependent helicase HrpB from Pseudomonas putida KT2440

Subject, 1360 a.a., ATP-dependent helicase HrpA from Pseudomonas stutzeri RCH2

 Score =  247 bits (631), Expect = 3e-69
 Identities = 172/473 (36%), Positives = 254/473 (53%), Gaps = 28/473 (5%)

Query: 3   SLPIDAALPALRQALENRDEVVLEAPPGAGKTTRVPLALLHEPWLAGQSILMLEPRRLAA 62
           SLPI A    ++ ALE    +V+    G+GKTT++P   L         I   +PRRLAA
Sbjct: 71  SLPIAAKRDEIKAALEKHQVLVIAGETGSGKTTQLPKICLEIGRGVHGLIGHTQPRRLAA 130

Query: 63  RAAAERLASELGEQVGETVGYRIRLDSKVGPKTRIEVVTEGILTRRLQADPALEGVGLLI 122
           R+ A R+A E+G  +GE VGY++R + +    + I+++T+GIL    Q D  LE    +I
Sbjct: 131 RSVATRVAEEIGTPLGELVGYQVRFEDQSKDSSLIKLMTDGILLAETQHDRFLERYDTII 190

Query: 123 FDEFHERSLDADLALALSLNGRELLRDDPPLKILLMSATLEGERLSRLLDDAPVVSSEGR 182
            DE HERSL+ D  L      + LL   P LK+++ SAT++ +R S   D AP+V   GR
Sbjct: 191 VDEAHERSLNIDFLLGFL---KTLLPRRPDLKVIITSATIDLQRFSEHFDGAPIVEVSGR 247

Query: 183 MHPVDIRWGRPF-----QPGEFIEPRV-VDCVLHALADQA-----------GSVLVFLPG 225
            +PV+  W RP      + G  +E  + VD  + A  D+            G VLVFLPG
Sbjct: 248 TYPVET-WYRPLAAEIDEDGNRVEDDLTVDQGILAALDEITAHEQSVGKRPGDVLVFLPG 306

Query: 226 QAEIRRVHQSLQEVLGARPEILLCPLHGELDLNAQRAAIDPPAKGLRKVVLATNIAETSL 285
           + EIR   + L++      E+L  PL+  L   A++  I  P  G RK+VLATN+AETSL
Sbjct: 307 EREIRDAAEVLRKANLKFTEVL--PLYARLT-PAEQQKIFQPRPG-RKIVLATNVAETSL 362

Query: 286 TIDGVRVVIDAGLARVPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEA 345
           T+ G+R VID+G AR+ R+   + + RL  + +S+ASA QR GR GR+EPG+C RL+SE 
Sbjct: 363 TVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYSEE 422

Query: 346 QHDQLAAHGSAEILQADLAGLALQLARWGVTP-EQLRWLDQPPAAAYAQAQDLLARLSAF 404
                      EIL+ +LA + LQ+    +   +   +++ P   A +   +LL  LSA 
Sbjct: 423 DFLGRPEFTDPEILRTNLAAVILQMLHLRLGDIQDFPFIEPPDGKAISDGFNLLQELSAV 482

Query: 405 RPGSRDTLSEHGQAMAELPAHPRIAHLLLRGQDLGLAQMACDVAALLGERDIQ 457
                + L+  G+ +A LP  PR+  +LL     G       VA+ L  +D++
Sbjct: 483 --NRENQLTPMGRQLARLPIDPRLGRMLLEAAQQGSLAEVLIVASALSVQDVR 533