Pairwise Alignments

Query, 842 a.a., ATP-dependent helicase HrpB from Pseudomonas putida KT2440

Subject, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

 Score =  237 bits (604), Expect = 4e-66
 Identities = 155/462 (33%), Positives = 242/462 (52%), Gaps = 18/462 (3%)

Query: 4   LPIDAALPALRQALENRDEVVLEAPPGAGKTTRVPLALLHEPWLAGQSILMLEPRRLAAR 63
           LP+      + QA+ +   V++    G+GKTT++P             I   +PRRLAAR
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 64  AAAERLASELGEQVGETVGYRIRLDSKVGPKTRIEVVTEGILTRRLQADPALEGVGLLIF 123
           + A R+A E+  ++G  VGY++R   ++  +T+I+++T+GIL   +Q D  L     +I 
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTIII 206

Query: 124 DEFHERSLDADLALALSLNGRELLRDDPPLKILLMSATLEGERLSRLLDDAPVVSSEGRM 183
           DE HERSL+ D  L      ++LL   P LK+++ SAT++ ER S+   +AP++   GR 
Sbjct: 207 DEAHERSLNIDFILGYL---KQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEVSGRT 263

Query: 184 HPVDIRWGRPFQPGEFIEPR------VVDCVLHALADQAGSVLVFLPGQAEIRRVHQSLQ 237
           +PV++R+ RP    +  E        +   V     +  G +L+F+ G+ EIR    +L 
Sbjct: 264 YPVEVRY-RPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADALS 322

Query: 238 EVLGARPEILLCPLHGELDLNAQRAAIDPPAKGLRKVVLATNIAETSLTIDGVRVVIDAG 297
           +      EI+  PL+  L    Q     P A   R++VLATN+AETSLT+ G++ VID G
Sbjct: 323 KRNLRDTEIV--PLYARLSAGEQNKIFQPHAG--RRIVLATNVAETSLTVPGIKYVIDPG 378

Query: 298 LARVPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAHGSAE 357
            AR+ R+   + + RL  + IS+ASA QR GR GR E G+C RL+SE            E
Sbjct: 379 TARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPE 438

Query: 358 ILQADLAGLALQLARWGVTP-EQLRWLDQPPAAAYAQAQDLLARLSAFRPGSRD---TLS 413
           IL+ +LA + LQ+   G+   E   +++ P          LL  L A     +D    L+
Sbjct: 439 ILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLT 498

Query: 414 EHGQAMAELPAHPRIAHLLLRGQDLGLAQMACDVAALLGERD 455
           E G+ +A LP  PR+A ++L    LG  +    +A+ L  +D
Sbjct: 499 ESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQD 540