Pairwise Alignments

Query, 842 a.a., ATP-dependent helicase HrpB from Pseudomonas putida KT2440

Subject, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

 Score =  632 bits (1631), Expect = 0.0
 Identities = 371/841 (44%), Positives = 515/841 (61%), Gaps = 29/841 (3%)

Query: 1   MISLPIDAALPALRQALENRDEVVLEAPPGAGKTTRVPLALLHEPWLAGQSILMLEPRRL 60
           M  LPI   +P L   + N  +++L+A PGAGK+T  PL LL      G+ I+MLEPRRL
Sbjct: 1   MSPLPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAGGFHGK-IIMLEPRRL 59

Query: 61  AARAAAERLASELGEQVGETVGYRIRLDSKVGPKTRIEVVTEGILTRRLQADPALEGVGL 120
           AAR  A  LA +LGE+VG+ VGYR+R +++V   T++E+VTEGI+TR LQ DP L+GV +
Sbjct: 60  AARNIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDV 119

Query: 121 LIFDEFHERSLDADLALALSLNGRELLRDDPPLKILLMSATLEGERLSRLLDDAPVVSSE 180
           LIFDEFHERS+ AD ALAL+L  +  LR+D  LKI++MSATL+ + L  LL  A  V S+
Sbjct: 120 LIFDEFHERSIHADTALALALEVQSALRED--LKIVVMSATLDQQALQNLLPQASYVESQ 177

Query: 181 GRMHPVDIRWGRPFQPGEFIEPRVVDCVLHALADQAGSVLVFLPGQAEIRRVHQSLQEVL 240
           GR  P++IR+ +P +  E +   +   + H L  + GS+L FLPG A I ++ + L ++ 
Sbjct: 178 GRGFPIEIRY-QPLRSDEPLVTAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQLSDLA 236

Query: 241 GARPEILLCPLHGELDLNAQRAAIDPPAKGLRKVVLATNIAETSLTIDGVRVVIDAGLAR 300
               E+ +CPL+G+++  AQ+ AI P A G RKVVLATNIAETSLTI+G+R+V+D+GL R
Sbjct: 237 S---EVEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLER 293

Query: 301 VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAHGSAEILQ 360
             RFD  +G+TRL+  RI+++SA QRAGRAGRLEPG+C RL+SEAQ  Q       E+L 
Sbjct: 294 SARFDLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLH 353

Query: 361 ADLAGLALQLARWGVTPEQLRWLDQPPAAAYAQAQDLLARLSAFRPGSRDTLSEHGQAMA 420
            DLA LAL+LA+WG  P  L WL+ PP++A+AQAQ LL RL      +R  ++  G+   
Sbjct: 354 TDLAPLALELAQWGAQPSDLAWLNLPPSSAFAQAQQLLQRLGLL--DARTQITAAGKEAH 411

Query: 421 ELPAHPRIAHLLLRGQDLG--LAQMACDVAALLGERDIQRGGGADLHSRLALVSGESKAA 478
            L   PRIA +LL    LG    Q A  +  LL E + Q            ++  +    
Sbjct: 412 LLGVEPRIAAMLLSADRLGESALQSALALTVLLEEPERQ------------VIDVQHSLH 459

Query: 479 RGGQGGVQRARQLARQYRGLLRGKVGAPVADPDHPRWLGALLALAYPDRVAQQRRAGGAE 538
           R  QG   + + L ++ + L      A         WL  +  LA+PDR+AQQR     +
Sbjct: 460 RWQQGRHPKQKLLIQRAQSLAHKLDTAFSLSSVDSAWLPLVACLAFPDRIAQQRGQQTGQ 519

Query: 539 YRLANGRAALFGEVDALMKCPWLVIADLGSRQGQREERIYLAAEFDPALLEGVLAEQVER 598
           + LANG  A     D L    +LV  DL   Q Q  + I+ A E D   LE VL   + R
Sbjct: 520 FLLANGHGAWLAVEDRLSAADYLVALDLMRGQTQASQ-IFSALELDIHALERVLPALISR 578

Query: 599 VDILDWDEREQVLRAERQVKVGELVLSREPLPGLDDEARTRALLGLVRRKGLNLLTWTPE 658
           V+ +DWDE+   L AE Q ++ +LVL RE LP  D +  T+ALL  VRRKGL +L W+ +
Sbjct: 579 VEQVDWDEKAGRLSAEAQWRIDQLVLRREKLPEPDKQKMTQALLSYVRRKGLTVLQWSED 638

Query: 659 LRQWQARVALLRQLDLQKDGHSEWPDLGDEALLASLEDWLQPYLSKVSRLSHFAALDLPS 718
             +W AR     +   ++     WP L DE LLA LE WL+PYL+ V+ +    ++ +  
Sbjct: 639 ASEWLARARCAAEWLPEE----AWPALDDETLLARLELWLEPYLAGVTSVKGLQSVSVLQ 694

Query: 719 MLRNLLPWPLPQRLEEQAPAHLAVPSGSNIRLDYS-ETPPILAVRLQELFGLADTPRIAN 777
            L++ L W L Q+L+E  P H  +P+G++ ++ Y     P L+VR+QE+FG   +PR+A 
Sbjct: 695 ALKHYLGWELSQQLDEWLPTHHLLPTGNHKKIRYQLGMEPTLSVRMQEVFGEQSSPRVAK 754

Query: 778 GRQQVKLHLLSPARRPVQVTQDLASFWRTTYAEVKKDLKGRYPKHYWPDDPLVAEATARA 837
           G + V + LLSPA+RP+QVT+DLASFW   Y EV+K++KGRYPKH WPDDP    AT++ 
Sbjct: 755 GTRAVVMELLSPAQRPLQVTRDLASFWAGAYKEVQKEMKGRYPKHVWPDDPANHVATSKT 814

Query: 838 K 838
           K
Sbjct: 815 K 815