Pairwise Alignments

Query, 842 a.a., ATP-dependent helicase HrpB from Pseudomonas putida KT2440

Subject, 820 a.a., ATP-dependent helicase from Sinorhizobium meliloti 1021

 Score =  636 bits (1641), Expect = 0.0
 Identities = 373/845 (44%), Positives = 507/845 (60%), Gaps = 35/845 (4%)

Query: 3   SLPIDAALPALRQALENRDEVVLEAPPGAGKTTRVPLALLHEPWLAGQSILMLEPRRLAA 62
           +LPI   LP L  AL +   VVL APPGAGKTT VPL LL +PW     I++LEPRRLAA
Sbjct: 6   ALPIREILPGLGDALASAGSVVLSAPPGAGKTTLVPLFLLDQPWRGDGKIILLEPRRLAA 65

Query: 63  RAAAERLASELGEQVGETVGYRIRLDSKVGPKTRIEVVTEGILTRRLQADPALEGVGLLI 122
           RAAA R+A  LGE+VGETVGYR+RLD++V  KTRIEVVTEG+ +R +  DP L GV  ++
Sbjct: 66  RAAAGRMAELLGEKVGETVGYRMRLDNRVSGKTRIEVVTEGVFSRMILDDPELSGVSAVL 125

Query: 123 FDEFHERSLDADLALALSLNGRELLRDDPPLKILLMSATLEGERLSRLLDDAPVVSSEGR 182
           FDEFHERSLDAD  LAL+L+ +  LR+D  L+I++MSATL+ ER++ L+ DAPV+ SEGR
Sbjct: 126 FDEFHERSLDADFGLALALDVQSALRED--LRIVVMSATLDVERIAGLVGDAPVLKSEGR 183

Query: 183 MHPVDIRWGRPFQPGEFIEPRVVDCVLHALADQAGSVLVFLPGQAEIRRVHQSLQEVLGA 242
             P+DIR+      GE +E  +V  +  A   + GS+L FLPGQAEI R    L +  G 
Sbjct: 184 SFPIDIRYENR-AAGESVEDAMVRTIAEAHRSEKGSILAFLPGQAEIARTAARLADRFGE 242

Query: 243 RPEILLCPLHGELDLNAQRAAIDPPAKGLRKVVLATNIAETSLTIDGVRVVIDAGLARVP 302
              I+  PL+G L    Q AAI P  KG RK+VLAT+IAETS+TIDGVR+V+D+GL R+P
Sbjct: 243 ATAIV--PLYGNLSQKEQDAAIRPAPKGTRKIVLATSIAETSITIDGVRIVVDSGLQRLP 300

Query: 303 RFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAHGSAEILQAD 362
            F+  +G+TRL+T R+SRASA QRAGRAGR EPG+  RLW   Q   LAA    +IL +D
Sbjct: 301 VFEASTGITRLETVRVSRASADQRAGRAGRTEPGIAIRLWHSGQTAALAAFTPPQILASD 360

Query: 363 LAGLALQLARWGVT-PEQLRWLDQPPAAAYAQAQDLLARLSAFRPGSRDTLSEHGQAMAE 421
           L+GL L LA WGV  P  LR+LD PP     +A+ LL  L A    SR  L+  G+ + +
Sbjct: 361 LSGLLLDLAHWGVADPSTLRFLDPPPETTLREARGLLLELGAI--DSRGALTPRGRRIRD 418

Query: 422 LPAHPRIAHLLLRGQDLGLAQMACDVAALLGERDIQRGGGADLHSRLALVSGE----SKA 477
           L    R+A + +   + G AQ AC +A +L E+ +  G G D+  RL     E    +KA
Sbjct: 419 LALPVRLAAMAVAAAEEGRAQEACLLAVMLTEQGL-GGNGIDIEERLRRFRSERSDRAKA 477

Query: 478 ARGGQGGVQRARQLARQYRGLLRGKVGAPVADPDHPRWLGALLALAYPDRVAQQRRAGGA 537
           ARG          LAR+    +  ++GA       P   GALL  A+PDR+A Q R G  
Sbjct: 478 ARG----------LARR----MAAELGASKNAGPKPVLPGALLMHAFPDRIALQ-RGGRG 522

Query: 538 EYRLANGRAALFGEVDALMKCPWLVIADLGSRQGQREERIYLAAEFDPALLEGVLAEQVE 597
            + +ANGR A   E + L     LVIADL  R G   +R+  AAE D + +EG + E + 
Sbjct: 523 RFVMANGRGAEIPETERLAAAGMLVIADLTGRAG--AQRVLAAAEIDRSDVEGHMPEAIV 580

Query: 598 RVDILDWDEREQVLRAERQVKVGELVLSREPLPGLDDEARTRALLGLVRRKGLNLLTWTP 657
             +   +D   + +RA R  ++G ++   +PLP    EA  RAL   +R+ GL  + +  
Sbjct: 581 TEEQSFFDRASRQVRARRVTRLGAIIFEEKPLPRPSGEAAARALADGIRQLGLAAVPFPK 640

Query: 658 ELRQWQARVALLRQLDLQKDGHSEWPDLGDEALLASLEDWLQPYLSKVSRLSHFAALDLP 717
           ++ Q + R+       L +     WPD+ D  L++ L++W  P+      +      DL 
Sbjct: 641 DVEQLRDRIGF-----LHRSIGEPWPDMSDTGLISRLDEWFVPFQGGAGGIDGIKGRDLA 695

Query: 718 SMLRNLLPWPLPQRLEEQAPAHLAVPSGSNIRLDYSETPPILAVRLQELFGLADTPRIAN 777
             L +L+P+ L + L   AP H   P+G    + Y    P+L++R+QELFGL   P I +
Sbjct: 696 EGLMSLVPYELQRDLARLAPTHFEAPTGQRHPIHYDGDEPLLSIRVQELFGLKTHPAIGD 755

Query: 778 GRQQVKLHLLSPARRPVQVTQDLASFWRTTYAEVKKDLKGRYPKHYWPDDPLVAEATARA 837
           GR  + L L+SP  RP+Q T+DL  FW  ++ +V+ +++GRYPKH WP+DP  A  T RA
Sbjct: 756 GRLPLLLELISPGHRPIQTTRDLPGFWAGSWKDVRAEMRGRYPKHPWPEDPANAMPTTRA 815

Query: 838 KPRGS 842
           KPRG+
Sbjct: 816 KPRGT 820