Pairwise Alignments

Query, 842 a.a., ATP-dependent helicase HrpB from Pseudomonas putida KT2440

Subject, 1333 a.a., ATP-dependent RNA helicase HrpA from Ralstonia sp. UNC404CL21Col

 Score =  251 bits (642), Expect = 2e-70
 Identities = 161/467 (34%), Positives = 256/467 (54%), Gaps = 24/467 (5%)

Query: 3   SLPIDAALPALRQALENRDEVVLEAPPGAGKTTRVP---LALLHEPWLAGQSIL-MLEPR 58
           +LP+ A    + +A+     V++    G+GKTT++P   L++       G  ++   +PR
Sbjct: 70  ALPVSARRDEIAEAIAANQVVIVSGETGSGKTTQLPKICLSIGRGIGAGGTGLIGHTQPR 129

Query: 59  RLAARAAAERLASELGEQVGETVGYRIRLDSKVGPKTRIEVVTEGILTRRLQADPALEGV 118
           R+AA + A+R+A E+G  VGE VG+++R +  +     ++++T+GIL    Q DP L   
Sbjct: 130 RIAATSTAKRIAQEIGTPVGEHVGFQVRFNDTLSAGASVKLMTDGILLAETQNDPLLRAY 189

Query: 119 GLLIFDEFHERSLDADLALALSLNGRELLRDDPPLKILLMSATLEGERLSRLL----DDA 174
             +I DE HERSL+ D  +      ++LL   P LK+++ SAT++ +R +         A
Sbjct: 190 DTIIIDEAHERSLNIDFLIGYL---KQLLPRRPDLKVIITSATIDAQRFAEHFAGPKGPA 246

Query: 175 PVVSSEGRMHPVDIRWGRPFQPGEFIEPR-----VVDCVLHALADQAGSVLVFLPGQAEI 229
           PV+   GR++PV++R+ RP Q  E  + R     +VD V     +  G VL+FLPG+ EI
Sbjct: 247 PVIEVSGRLYPVEVRY-RPIQRDEKDKERDLYEALVDAVDELAREGPGDVLIFLPGEREI 305

Query: 230 RRVHQSLQEVLGARPEILLCPLHGELDLNAQRAAIDPPAKGLRKVVLATNIAETSLTIDG 289
           R   ++L++   A  EIL  PL   L +  Q     P     R++VLATN+AETSLT+ G
Sbjct: 306 REAAEALRKHHPAHTEIL--PLFARLSVQEQERVFRP--SNARRIVLATNVAETSLTVPG 361

Query: 290 VRVVIDAGLARVPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQ 349
           +R V+D GLARV R+   + + +L  + +S+A+A QRAGR GR+  GVC RL+ EA    
Sbjct: 362 IRYVVDTGLARVKRYSYRNKVEQLQIEPVSQAAANQRAGRCGRVADGVCIRLYDEADFIA 421

Query: 350 LAAHGSAEILQADLAGLALQLARWGVTP-EQLRWLDQPPAAAYAQAQDLLARLSAFRPGS 408
                  EIL++ LA + L++    +T  EQ  +++ P   A A    LL  L A     
Sbjct: 422 RPRFTDPEILRSSLAAVILRMKALRLTDVEQFPFIEPPLGRAIADGYQLLQELGAV--DD 479

Query: 409 RDTLSEHGQAMAELPAHPRIAHLLLRGQDLGLAQMACDVAALLGERD 455
            + L+  G+ +A LP  PR+A ++L G+D    +    +A+ L  +D
Sbjct: 480 ENALTPLGKQVARLPLDPRVARMILAGRDHQCLREMLIIASALSVQD 526