Pairwise Alignments

Query, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

 Score =  381 bits (979), Expect = e-110
 Identities = 211/415 (50%), Positives = 271/415 (65%), Gaps = 14/415 (3%)

Query: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60
           M+FA LGL E L+  ++   YT PTPVQ +AIPAVL GRDLM AAQTGTGKT GFALP+L
Sbjct: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  QRLALEG-----EKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSIN 115
           +RL   G     ++      R LVL PTRELA QVH + + YA +L   +  ++GGV +N
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120

Query: 116 PQMMRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAA 175
           PQ+  + RGVD+LVA PGRLLDL  Q +V  + V+ LVLDEADRMLD+GF  +++ V A 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 176 LPRKRQTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLF 235
           LP KRQ LLFSATFS  I  LAG  L++P  IEV+P N T   ++Q +  +    K  L 
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240

Query: 236 CHLLRKQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREV 295
            HL+    W+QVLVF +T++G ++L E L   G+ A  IHG++ Q  R +AL  FKA EV
Sbjct: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300

Query: 296 QVLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQL 355
           ++LVATD+AARGLDID LP VVN +LP V EDYVHRIGRTGRAG  GEAISLV  DE +L
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 356 LAAIEVLTRQTLPRHEEPDFIPEHRVPMTDASGQVIKKPKKPKKPKENSAKRGLG 410
           L +IE +T+Q +   +   F         DAS    +KP+  ++P   + +   G
Sbjct: 361 LKSIERMTKQKIADGDLMGF---------DASTIEAEKPEVRERPDVRNPRNARG 406