Pairwise Alignments

Query, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  278 bits (710), Expect = 3e-79
 Identities = 163/411 (39%), Positives = 241/411 (58%), Gaps = 16/411 (3%)

Query: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60
           M+F+ L L   L++ L +   T P+ +Q   IPA+L G+D+ A A TG+GKT  + LP+L
Sbjct: 23  MSFSSLALSADLIQALPKA-ITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81

Query: 61  QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMMR 120
           +RL    E+      +ALVLVPTRELA QV   +      L L T  + GGV    Q   
Sbjct: 82  ERLKTSPEQ------QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNA 135

Query: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180
           L    ++LVAT GRL DL  Q+ ++ N+V TLVLDEADR+LD+GF  ++Q++ +     R
Sbjct: 136 LAENPNILVATTGRLFDL-TQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVR 194

Query: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHLLR 240
           QT++ SATFSD +++ A   +  P  +  +P N+   +V++ L  V+K  K      LL+
Sbjct: 195 QTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLK 254

Query: 241 KQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVA 300
           + +W QVLVF   +   D L ++L   G+ A  +HGD+ Q+ R+ AL  FK    QVL+A
Sbjct: 255 QHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIA 314

Query: 301 TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIE 360
           TD+ ARG+ I+ LP+V+N +LP+ AE YVHR+GRT RAG  G A+SLVC  E+  L A  
Sbjct: 315 TDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATR 374

Query: 361 VLTRQTLPRHEEPDFIPEHRVPMTD--ASGQVIKKPKKPKKPKENSAKRGL 409
            LT++ LP      F      P+TD  ++G+  + P+  +  +    K+ +
Sbjct: 375 TLTQRELPVQNLEGF------PVTDQPSTGESKRAPRDKQANRRTQNKKSV 419