Pairwise Alignments

Query, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

 Score =  436 bits (1122), Expect = e-127
 Identities = 224/402 (55%), Positives = 295/402 (73%), Gaps = 2/402 (0%)

Query: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60
           M F  LGL  P+L+ +++  Y TP+P+Q +AIPAVLAG+D+MAAAQTGTGKTAGF LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMMR 120
           + LA +G KV +N +RAL+L PTRELA Q+ +NV  Y  +LPL +  V+GGV INPQM R
Sbjct: 61  ELLA-KGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQR 119

Query: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180
           + +G D+LVATPGRL+DL+ QNAVKF+Q++ LVLDEADRMLD+GF  ++  +   LP KR
Sbjct: 120 MCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKR 179

Query: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHLLR 240
           Q LLFSATFS +IR LA   +N+P+ I VSP N+TA +V+Q + P D K+K D+   L++
Sbjct: 180 QNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVK 239

Query: 241 KQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVA 300
           +  W+QVLVF +T++G ++L   L  +G+ A  IHG++ Q  R RAL  FKA EV++LVA
Sbjct: 240 EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVA 299

Query: 301 TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIE 360
           TD+AARG+DI  LP VVN +LP +AEDYVHRIGRTGRAG  G+AISLV A E   L AIE
Sbjct: 300 TDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIE 359

Query: 361 VLTRQTLPRHEEPDFIPEHRVPMTDASGQVIKKPKKPKKPKE 402
            LT+  LPR     F P +++P +    + + KPKKPKKPK+
Sbjct: 360 RLTQALLPRVNLAGFEPTNQLPESKLDTRPL-KPKKPKKPKK 400