Pairwise Alignments

Query, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 447 a.a., putative ATP-dependent RNA helicase RhlE from Phaeobacter inhibens DSM 17395

 Score =  331 bits (849), Expect = 2e-95
 Identities = 183/410 (44%), Positives = 255/410 (62%), Gaps = 5/410 (1%)

Query: 3   FAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQR 62
           F+ +GL E LL  + +L YT PTP+QA+AIP  L G+D++  AQTGTGKTA F +P++ +
Sbjct: 9   FSTMGLPEKLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLIAQ 68

Query: 63  LALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMMRLR 122
           +   G K A+ ++R LVL PTRELA Q+  N++   E  P+ T  V GGVSINPQ+ RL 
Sbjct: 69  MMQYGRKPAAKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQISRLS 128

Query: 123 RGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKRQT 182
           RG D+L+ATPGRLLD+  + A+       LVLDEAD+MLDLGF   L+ + A LP +RQT
Sbjct: 129 RGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEQRQT 188

Query: 183 LLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHLLRKQ 242
           +LFSAT   Q+  +A   L  P+ IEV+P    A  + Q +  + K  K  L   LL   
Sbjct: 189 MLFSATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQSVHFIAKAEKLSLLKELLGAH 248

Query: 243 RWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVATD 302
           + ++ LVF +T++G+++L++ L A G +A  IHG++ Q  R+RAL SFK+ EV++LVATD
Sbjct: 249 KDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVKILVATD 308

Query: 303 VAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIEVL 362
           VAARGLDI D+  V N +LP V + YVHRIGRT RAG  G+A++    DE+  L AI+  
Sbjct: 309 VAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMGELKAIQKT 368

Query: 363 TRQTLP--RHEEPDFIPEHRVPMTDASGQVIKKPKKPKKPKENSAKRGLG 410
               +P       + +P+ + P     G    KP    KP  +  +R  G
Sbjct: 369 MNLNIPVASGRPWEVLPDAKAPAGRRGG---GKPGGGGKPGGHRRRRSGG 415