Pairwise Alignments

Query, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 432 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  336 bits (862), Expect = 7e-97
 Identities = 181/408 (44%), Positives = 256/408 (62%), Gaps = 4/408 (0%)

Query: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60
           M F        +L  + +  Y   TP+Q +AIPA+  G+D++A+AQTGTGKTA FALP+L
Sbjct: 1   MRFESFSFAPEILHAISECGYQKMTPIQKEAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMMR 120
           Q++         ++ RAL+L PTREL  QV +N+++Y+  LP++   VYGGV ++ Q  +
Sbjct: 61  QKMFDSPSDTQRSNTRALILAPTRELVAQVADNIKQYSRYLPISVLTVYGGVKMDTQAAK 120

Query: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180
           +++G D++VATPGRLL+  +   +  + V  LVLDEADRMLD+GF  ++Q +   + R R
Sbjct: 121 VKKGADIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFITDIQKILQQVNRDR 180

Query: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHLLR 240
           Q LLFSATFS  ++ LA   L  P  I V  +N TA +V Q + PV+++RK +L   L+ 
Sbjct: 181 QNLLFSATFSSAVKQLANEMLVKPKLIAVDKQNTTAVTVSQVVYPVEQRRKRELLSELIG 240

Query: 241 KQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVA 300
           K+ W+QVLVF  TR   D LV+ L  +G+ +  +H ++ Q  R+RAL  FK  +V+ LVA
Sbjct: 241 KKNWQQVLVFTATREAADVLVKELNLDGIPSAVVHSEKAQGNRRRALREFKEGKVRALVA 300

Query: 301 TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIE 360
           T+VAARGLDI +L  VVN DLP +AEDYVHRIGRTGRAG  G AISLV  +E + LA IE
Sbjct: 301 TEVAARGLDIPELEYVVNFDLPFLAEDYVHRIGRTGRAGRTGVAISLVSREEERTLADIE 360

Query: 361 VLTRQTLPRHEEPDFIPEHRVPMTDASGQVIKKPKKPKKPKENSAKRG 408
            L    + R      IP + V   D   + ++K +   K ++ S   G
Sbjct: 361 KLIGNKIRRIT----IPGYEVGSRDLLIKQLQKRRSFAKKQQRSDNVG 404