Pairwise Alignments

Query, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 447 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  312 bits (800), Expect = 1e-89
 Identities = 191/422 (45%), Positives = 258/422 (61%), Gaps = 29/422 (6%)

Query: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60
           + FA+LGL   L + L       PT VQ  AIPA+LAGRDL+A +QTG+GKT  F LP+L
Sbjct: 17  LTFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLL 75

Query: 61  Q----RLALE--GEKVASNSIRALVLVPTRELAEQVHNNVREYAENL----PLTTYAVYG 110
           Q    ++A++   + V +    ALVLVPTRELA QV   +   A  L    PL    + G
Sbjct: 76  QILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCG 135

Query: 111 GVSINPQMMRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQ 170
           GV++  Q+  L     L+VATPGRLLDL  Q+ +  + ++ LVLDEADR+L++GF  ++Q
Sbjct: 136 GVALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQ 195

Query: 171 SVYAALPRKRQTLLFSATFSDQIRMLAG-LALNDPLSIEVSPRNATAASVKQWLVPVDKK 229
            + A +P+++QTLLFSAT  + +  LAG L  NDPL +E S RNA    +++ L  V+K 
Sbjct: 196 KLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNKG 255

Query: 230 RKADLFCHLLRKQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDS 289
            KA     LL++ +W QVLVF   R+  D + +RL+  G+NA  +HG++ Q  R + L  
Sbjct: 256 SKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLAD 315

Query: 290 FKAREVQVLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVC 349
           FKA  +QVLVATD+ ARG+ +D LP+V+NLDLP  A  YVHRIGRT RAG KG AISLVC
Sbjct: 316 FKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVC 375

Query: 350 ADEVQLLAAIEVLTRQTLPRHEEPDFIPEHRVPMTD---------ASGQVIKKPKKPKKP 400
             E+  L AI  LT + LP     DF      P+TD         A  +VI  PK+P + 
Sbjct: 376 HGEMPNLTAIRNLTARALPLVFLADF------PVTDKPSEKIIDGAENKVI--PKRPPRD 427

Query: 401 KE 402
           K+
Sbjct: 428 KQ 429