Pairwise Alignments

Query, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 409 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  369 bits (947), Expect = e-106
 Identities = 199/413 (48%), Positives = 267/413 (64%), Gaps = 11/413 (2%)

Query: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60
           M+F+ L L   L+ TL +L Y  PTP+Q +AIPA+LA +D+MA AQTGTGKTA FALP+L
Sbjct: 1   MSFSALSLHSQLVNTLAELGYQQPTPIQIEAIPAILAKQDVMAGAQTGTGKTAAFALPIL 60

Query: 61  QRLALEGEKV-ASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMM 119
           Q+L ++ E   A   +RALVLVPTRELA QV  +  +YA+   +     YGGVSI  Q  
Sbjct: 61  QQLLIDNESQDAPKDVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120

Query: 120 RLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRK 179
             + G+D+L+ATPGRLLD  RQ A+   ++  LV DEADRMLD+GF +E+++V   +P +
Sbjct: 121 EFKAGIDVLIATPGRLLDHLRQGALNLKRLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQ 180

Query: 180 RQTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHLL 239
           RQTLLFSAT  D I   +   L DP  IEV+ RN TAA V+Q +  +D  RK +   HL+
Sbjct: 181 RQTLLFSATLDDSIFGFSKNLLRDPKLIEVAKRNTTAAQVEQRVYAIDSDRKTEFVSHLV 240

Query: 240 RKQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLV 299
           R + W+QVL+F++T+ GVD+L  +L   GV     HGD  Q  R++ L  FK   VQVLV
Sbjct: 241 RSKNWQQVLIFSRTKQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQVLV 300

Query: 300 ATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAI 359
           ATDVAARGLDI DL  V+N +LP +AEDY+HRIGRTGRAG+ G AI+L   ++  LL  +
Sbjct: 301 ATDVAARGLDIADLQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEV 360

Query: 360 EVLTRQTLPRHEEPDFIPEHRVPMTDASGQVIKKPKKPKK--PKENSAKRGLG 410
           E L  + LP+   P F P+          ++  +P++  K   K+ + KR LG
Sbjct: 361 EALLDKRLPQQWYPGFEPDF--------NKMEPEPRRNSKAAQKQRAKKRALG 405