Pairwise Alignments

Query, 304 a.a., Histone deacetylase family protein from Pseudomonas putida KT2440

Subject, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

 Score =  254 bits (648), Expect = 2e-72
 Identities = 129/293 (44%), Positives = 176/293 (60%), Gaps = 6/293 (2%)

Query: 3   LPLIYHEDYSP-EFPAEHRFPMDKFRLLHDHLVGSGLTTD--QALLR---PDICPNDILA 56
           +PLIYH  YS  + P  HR+P++K+RLL++ +V     ++  QA      P       + 
Sbjct: 2   IPLIYHPIYSQLDLPVGHRYPINKYRLLYEEIVRQREQSEAWQASFEFHTPIAAELSRIT 61

Query: 57  LAHDRSYIERYMNGELSREDQRRLGLPWSEALARRTVRAVGGSLLTAEMALQHGIACHLA 116
             HD  Y++  + G LS    RR+G PWS+ L  RT+ +VGG+ LT E ALQ G+A HL+
Sbjct: 62  RLHDPDYVQALLEGTLSAAKMRRIGFPWSKPLIERTLYSVGGTCLTVEQALQSGVAIHLS 121

Query: 117 GGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDGTARILHDTPEAI 176
           GG HHAH D  +GFC+FNDLA+ + + L    V +VLI D DVH GDGTA +  +  E I
Sbjct: 122 GGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHHGDGTATLCAERDEII 181

Query: 177 TVSLHCEQNFPARKAQSDWDIPLPRGMGDTAYLKVVDDALNYLLPLYQPDLVLYDAGVDV 236
           T+S HC++NFPARK  S  D+      GD  +L      +   + L++PDL+LYDAGVD+
Sbjct: 182 TLSFHCDKNFPARKPASSMDVGYANQTGDEEFLSTFIQVVEMAVNLHRPDLILYDAGVDI 241

Query: 237 HKDDALGYLQLTDAGVAARDEAVLRHCLGRDIPVMGVIGGGYSKDRTALARRH 289
           H DD LGYL ++ A +A RD  +L       IP+  VIGGGY +D TAL   H
Sbjct: 242 HNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACVIGGGYREDHTALVPLH 294