Pairwise Alignments

Query, 219 a.a., Amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 596 a.a., amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  124 bits (311), Expect = 4e-33
 Identities = 67/203 (33%), Positives = 116/203 (57%), Gaps = 2/203 (0%)

Query: 18  GFVLSMQVTAVSLGLGVVLGLLLALGVSSPSRWLRYPSLVVVELGRGAPALILLQYFYFG 77
           G   S+ +  +++ +   +GL++ +G +S +R  R P L+ +EL RG P +I++ + YF 
Sbjct: 389 GLAYSLLMAVIAISVSFFIGLVVGIGRTSDNRICRIPCLLYIELIRGNPLIIVIFWIYFF 448

Query: 78  LPSV-NLTLTSFWAAALAMAYCTAAYTSEIIRGGIESVAAGQTEAAEVIGLNRFDALRFV 136
           +P + N     FW+A +A+   T AY +EI+R GI+++ AGQ EAA   GL     +R +
Sbjct: 449 IPVLFNTFFNVFWSATIALTLFTGAYLAEIVRAGIQNIPAGQVEAAYSTGLTFVQTMRRI 508

Query: 137 ILPQALRVALPSLLGFSIMMFQASSLCFTIALPEIVSRASSIGSSTFEY-MPVLILAGLM 195
           ILPQAL+  +P+++G  I +F+ +SL F + + E+   A  I +    Y M +      +
Sbjct: 509 ILPQALKQMIPAIVGQFIAIFKDTSLAFVLGVLELTFVAQGINNRLMVYPMEIYGTVAFL 568

Query: 196 YAAVCAPATLGVAALEKRLAPSQ 218
           Y   C   ++  A LE+RL+P +
Sbjct: 569 YFICCWSMSVYAARLERRLSPEK 591



 Score = 95.5 bits (236), Expect = 2e-24
 Identities = 58/195 (29%), Positives = 100/195 (51%), Gaps = 9/195 (4%)

Query: 14  ELWKGFVLSMQVTAVSLGLGVVLGLLLALGVSSPSRWLRYPSLVVVELGRGAPALILLQY 73
           E+ KG  ++++++ +S  L + LG +L +   S    LR  +  VVE  R  P L+ L +
Sbjct: 56  EILKGLGVTVRISLISSALALGLGTVLGIARLSLFAPLRLTATAVVEFFRNTPLLVQLFF 115

Query: 74  FYFGLPSV------NLTLTS---FWAAALAMAYCTAAYTSEIIRGGIESVAAGQTEAAEV 124
           +YF  P++       L  T    FW A + ++  T+A+ +E+IR G++S+  G  EAA  
Sbjct: 116 WYFAFPAILPENIRELLFTGNFEFWCATIGLSVYTSAFMAEVIRAGLQSIPKGLLEAAYS 175

Query: 125 IGLNRFDALRFVILPQALRVALPSLLGFSIMMFQASSLCFTIALPEIVSRASSIGSSTFE 184
            GLN    LR +ILP A R  +P L    +   + SSL   + + E+  ++  + S TF+
Sbjct: 176 SGLNYVQVLRTIILPMAFRAIIPPLGSEFLNNMKNSSLAMVVGVAELTWQSQQVESLTFK 235

Query: 185 YMPVLILAGLMYAAV 199
                  A ++Y ++
Sbjct: 236 GFEATSAATVLYLSL 250