Pairwise Alignments

Query, 489 a.a., Type I restriction enzyme EcoEI M protein from Pseudomonas putida KT2440

Subject, 686 a.a., N-6 DNA methylase from Rahnella sp. WP5

 Score = 63.9 bits (154), Expect = 2e-14
 Identities = 72/256 (28%), Positives = 110/256 (42%), Gaps = 48/256 (18%)

Query: 141 RHEFGN-LYEQLLRDLQNAG--NAGEFYTPRPVTEFMVRMVDP---KLAEKVMDPACGTG 194
           R EF   LYE  LR  QNAG  + G+++TPR V   +V M D    K   +V DP CG G
Sbjct: 299 RREFKTRLYESFLR--QNAGVRSLGQYFTPRNVVRAIVSMSDSSKLKKGARVCDPFCGVG 356

Query: 195 GFLTCAIEHKRRRYVKTAEDERTLQAS--IFGVEK------KPLPHLLATTNMILHGIEV 246
           GFL   I   +  + +       +  S  I G +K           +LA  NM+++  ++
Sbjct: 357 GFLLELIAENKNIWNEFEPKNGLVNPSIDIIGYDKGSDEKEDERTIILAKANMLIYFSDL 416

Query: 247 PSQIRHDN---------------TLSKPLISWG--PSERVHCIVANPPF---------GG 280
             +    N                L   L ++G    E    I+ NPP+           
Sbjct: 417 LVKYHTPNYLKAFSEGAFNKVFHLLRSNLGTFGKVDDEPYDLILTNPPYVTSGSSSLKRS 476

Query: 281 MEEDGIETNFPAAFRTRETADLFLVLIMQLLKDGGRAAVVLPDGFLFGEGIKSRIKEKLL 340
           ++E+G+   + ++   R T  L +  I++ LK  G+A VV+PDG L  E +   +K    
Sbjct: 477 IDEEGLAKYYTSS--GRGTESLAMEWIVRNLKLDGQAIVVVPDGLLNQESMLGYLK---- 530

Query: 341 TECNLHTIVRLPNGVF 356
           T C +  +V LP   F
Sbjct: 531 TNCFIEAVVSLPTRTF 546