Pairwise Alignments

Query, 489 a.a., Type I restriction enzyme EcoEI M protein from Pseudomonas putida KT2440

Subject, 502 a.a., N-6 DNA methylase from Methanococcus maripaludis JJ

 Score = 50.1 bits (118), Expect = 2e-10
 Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 18/201 (8%)

Query: 140 ERHEFGNLYEQLLRDLQNAGNAGEFYTPRPVTEFMVRMV-DPKLAEKVMDPACGTG-GFL 197
           E  E+ N Y +  +  ++    G+F+TP  V +FM  +  D +  E++    CG+G G L
Sbjct: 8   EVQEYTNKYLEK-KSKKDRKKIGQFFTPAAVADFMASLSGDYENFEELNILDCGSGTGIL 66

Query: 198 TCAIEHKRRRYVKTAEDERTLQASIFGVEKKPLPHLLATTNMILHGIE-----VPSQIRH 252
             A+  K     KT ++ + L   ++ V+   LP L  +   I H +E        +I H
Sbjct: 67  ATALVDK----FKTHKNLKRLHIDLYEVDSDVLPILTKSMEYIKHKLENSPIKFTYKIIH 122

Query: 253 DNTLSKPLISWGPSE--RVHCIVANPPFGGME---EDGIETNFPAAFRTRETADLFLVLI 307
            N ++  + +W      R   +++NPP+  +    E+ +  N            LF+ + 
Sbjct: 123 GNFVTLNVDNWNSDSVGRYDLVISNPPYKKISKSCEEAVAMN-SIVHGQPNIYFLFMAMA 181

Query: 308 MQLLKDGGRAAVVLPDGFLFG 328
           ++LLK+ G    + P  F  G
Sbjct: 182 LKLLKENGEFIFINPRSFTSG 202