Pairwise Alignments

Query, 489 a.a., Type I restriction enzyme EcoEI M protein from Pseudomonas putida KT2440

Subject, 472 a.a., Type I restriction enzyme StySJI M protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  186 bits (471), Expect = 2e-51
 Identities = 153/472 (32%), Positives = 236/472 (50%), Gaps = 43/472 (9%)

Query: 22  GDAQRIGQLVWLLFLKIFDDRELEWELMDDNYKSPIPDSCRWRTWAADPEGMTG-DALKD 80
           G    I QL +LLFLK+  D E   E+  +  +S IP   +W    AD     G D +K 
Sbjct: 28  GFTDYITQLTYLLFLKM--DAE-NVEMFGE--ESAIPTGYQW----ADLIAFDGLDLVKQ 78

Query: 81  FIDN-NLFPQLQNLHEYSNTPSAFVVRSVFEDAYNYMKSGQLLRQVINKIQEGVDFNRAQ 139
           + +   L  +L NL           + +++  A N +     L++VI  I E  +     
Sbjct: 79  YEETLKLLSELDNL-----------IGTIYTKAQNKIDKPVYLKKVITMIDE--EQWLIM 125

Query: 140 ERHEFGNLYEQLLRD--LQNAGNAGEFYTPRPVTEFMVRMVDPKLAEKVMDPACGTGGFL 197
           +    G +YE +L          AG+++TPRP+ + MV  ++P++ E V DPACGTGGFL
Sbjct: 126 DGDVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFL 185

Query: 198 TCAIEHKRRRYVKTAEDERTLQASIFGVEKKPLPHLLATTNMILHGIEVP-SQIRHDNTL 256
             A ++ + +     + +     ++ GV+  PL   LA+ N+ LHGI    S I  +++L
Sbjct: 186 LTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSL 245

Query: 257 SKPLISWGPSERVHCIVANPPFGGMEEDGIETNFPAAF-RTRETADLFLVLIMQLLKDGG 315
            K      PS  V  I+ANPPFG      ++ N P  +  T+     FL  +M +LK GG
Sbjct: 246 EKE-----PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGG 300

Query: 316 RAAVVLPDGFLFGEGIKSRIKEKLLTECNLHTIVRLPNGVFNPYTGIKTNLLFFTKGTPT 375
           RAAVVLPD  LF  G    I+++LL + NLHTI+RLP G+F    G+K N+LFF+KG PT
Sbjct: 301 RAAVVLPDNVLFEAGAGETIRKRLLQDFNLHTILRLPTGIFYA-QGVKANVLFFSKGQPT 359

Query: 376 KQVWFYEHQYPAGVKNYSKTRPMRIEEFAVEEAWWGSEADGFAARAENAFAW-QVSVEEL 434
           K++WFY+  Y   +K+   T  +         + + +  + + A       W +  V+E+
Sbjct: 360 KEIWFYD--YRTDIKHTLATNKLERHHLDDFVSCYNNRVEIYDAENNPQGRWRKYPVDEI 417

Query: 435 QARN-WNLDCKNPHTGEQVSHDPDELLRNYASVQDE---ISDLRDQLKAVLA 482
            AR+  +LD      G +V  D   L    A ++D+   IS    +L+ +LA
Sbjct: 418 IARDKTSLDITWIKPGGEV--DDRSLAELMADIKDKSQTISRAVTELEKLLA 467